| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0513 |
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| Symbol | |
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| ID | 4921857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 580547 |
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| End bp | 582205 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162042 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001092644 |
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| Protein GI | 127511447 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTTAAAA CCTTTCGTTT GCTCGCACAG AATCAGTCGT TCAACGAACT GCTCCTCACC
TCTGTGTTTA TCAATCTGCT TTCACTCGCC CTGCCTTTCA CCATGTTACA GATCTACGAT
CGTATCTTGC CCAACGAGGC ACACGGGACG GCAACAGTTC TAGTGATTGG AGTCGCTATC
GCCATCCTGT TGGAGCTAAT ACTCAGGTAC GCCCGTAGCT GGCTGCTGGG CGCTTCGGCG
GCCAACTATG AGCTGCACAC CATCACCCGG GTGGTGAAGC GTCTGCTCAA TGCCGATTAC
CACCACATAG AGAATCTCGG CGCGGGCAAG ATCTCCCACG GCATCCACAG CATAGCGGCC
ATGCGCGACA TCTATTCCGG CCAGGCGGCC GTGGCGCTGA TGGATTTCCC CTTCGTTCTA
ATCTTCCTCG CCCTAGTGGC CTACATAGGC GGGCCGCTGG TGTTTATCCC ACTGATCGTC
TGGCTGATCG CCGGCGTGAG AGTATGGCAG CTGGGGCAGA AACTCTCTCT CGCCACTAAG
GAGCTAAGCC TGAGCCAGGA TGAGCGCACC CGCCTCTTGA TGCTGGTGCT CTCAGGCCTC
ACTACCACCA AGGCGATGGC CCTCGAGTCC CGCATGACCT ACGCCTATAA GAAGATCAAT
CATCAGCGCC TCGCCCAGCA GGAGGAGGTC GACTGGTTGT CGGCGAAACT ACAGGAGCTG
ATCCAGGGCA CCGCCCAGGC CACCACCCTG TGCCTGGTGA TGATAGGCTG CTTCGAGGTG
CTCAACGGTA ACCTGACCAC GGGTGGCTTG GCGGCCTGCT CCATCCTGGC CGGGCGCGCC
GTCGCCCCCT TAAGCGCCAT CGGCAGCCTT AGGGCCAAAT ACGTCAGTGC CAAGGAGGCG
ATGGATCAGG TCAATGCTTT GATCGCGACG CCCCAGGAGA CCTTTAACGG CCAGACCCGC
TATCAACAGA AACTGCCCCT CGGCCCCATT AGCTTCGAGA GCGTCAGCGC CGAGAAGACC
AGTGCCCGGC TCGACAACAT CAGCCTCACC ATACCTGCGG GCTGCATAGT TACCGTTACC
TCCAACCCCA TGACCCATGC CAGCCTGCTA CTGAGCACCA TAGGCGCCTA TCACCAGCTA
GATAGTGGGC AGATCGCCAT CGCGGGTGTG CCGCAGCAGG ATCACGACGG CTTCGAGTAC
CGTCAATCCA TCTGCTATGT TCCCCCCTGG GCCAGCCTCT TCAGCGGCTC CATCTTGGAG
AACATGACGC TGTTTCGCCG CGAGCGTGAG GCGAGCGCCA TGCTGATCGC CGACCAACTC
GGCCTATCGG CCACCCTGGC GCAGCTGCCG GCGGGTTATC AGACCCAGGT GGGCAGCAAT
GAGAATCAGG TGCTCAACAA GGGGGCAATC AAGTTGATCG CCCTGGTACG AGCCCTGGCG
CAGTCCCCCT CCATCCTGCT GCTGGATGAG CCTATGGTTT CACTGGATGC CGACTCCCAG
GCCCGCCTGC TACAGGTGTT AATGGAGCGG CGCGGGCAGA TGACGGTTGT CATCGCCTCC
TATTTCGATG AGGTCGCGGC GCTGAGCGAC ATGCAGATCG CACTCGGCGA GCACGGCGAG
CTGGCTGGTC AAGCTCAAGG CCAAGGAGGA GTACGCTAA
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| Protein sequence | MVKTFRLLAQ NQSFNELLLT SVFINLLSLA LPFTMLQIYD RILPNEAHGT ATVLVIGVAI
AILLELILRY ARSWLLGASA ANYELHTITR VVKRLLNADY HHIENLGAGK ISHGIHSIAA
MRDIYSGQAA VALMDFPFVL IFLALVAYIG GPLVFIPLIV WLIAGVRVWQ LGQKLSLATK
ELSLSQDERT RLLMLVLSGL TTTKAMALES RMTYAYKKIN HQRLAQQEEV DWLSAKLQEL
IQGTAQATTL CLVMIGCFEV LNGNLTTGGL AACSILAGRA VAPLSAIGSL RAKYVSAKEA
MDQVNALIAT PQETFNGQTR YQQKLPLGPI SFESVSAEKT SARLDNISLT IPAGCIVTVT
SNPMTHASLL LSTIGAYHQL DSGQIAIAGV PQQDHDGFEY RQSICYVPPW ASLFSGSILE
NMTLFRRERE ASAMLIADQL GLSATLAQLP AGYQTQVGSN ENQVLNKGAI KLIALVRALA
QSPSILLLDE PMVSLDADSQ ARLLQVLMER RGQMTVVIAS YFDEVAALSD MQIALGEHGE
LAGQAQGQGG VR
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