| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0512 |
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| Symbol | |
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| ID | 4921197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 578448 |
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| End bp | 580547 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640162041 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001092643 |
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| Protein GI | 127511446 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAGC ACCTAGATCC GATACATCTA CCCAAGTCGC TGCTGATCGC CCTGTTCCAT
CAGCTGGGCC TTAGCGTGCA GGCCAGCAAC ATAGACAAGA GCGATCTCCA CGACAGGCTC
ACCCATCTCG AAGCCTATAT TCTGCTGAAG AAGCATCATG TGGGCATCAA GGTGCAGGCA
CTGGATGCTA ACCTCCTGGT CCACAGCGTC TACCCCTTCA TCTTGCTGCC TCAGGATGGC
GAGCCTATGG TGGCGCGGCG CAGCAACCAC AGTTTTCAAT ACTTAAGCAA AGATAATCAA
TGGCTCACAC TCGACAAGCT GCCGGGCGCC GGCCACGTGT TTCTGGTGGA GAGCCTGCCG
GCCCAGAGCC GAAGCAGCAG CGTGTTCGCC TCCCATCTCG CCAAGCTCAG GCCCTGGTAT
CGCCCCATCT TCTGGCTGAG TCTGCTATCC AGCCTGAGTG GCCTCGCCAT TCCACTCTTT
ACCATGGCGG TGTACGACAG GGTCATCGGC GGTCAGGCGC CGCAGATCCT GCCCAGCATT
GCCTTGGGTG CGGCCCTTGC CTTGGGAATT TTTGTCGCCA GTCGGCTGCT TAGGGCACAG
GCACTGGCCA ATGTCAGCAA CCGCTTCGCC AGGGATCTTT CCGGCATCAC CTTCAACCGC
CTGCTGAGCA TGCCCCTTAG CCTGCTCTCA CGGGTCGGCC TCTCCAGCCA TATCGCCAGG
ATGCGCAACG CCGAGAAGGT ACGCAGCCTG GTGGCCGGCC CTGGCGGAGG CGGCCTCATC
GATCTGCCCT TTACCCTCAT AGCTCTGGTC GCCATTACCC TATTGAGTGG TGTTTTGGTG
CTGGTGCCGC TAGGCATGTT GCTGCTCTTC TATCTGGTGA TGAAGGCGCT GGACAAATTT
ACCCAGGCCG CCGCGCCCAC CATCAGCGGC GAGTACCAGA ACAGCCTGAA CGAGCTCTCG
ACTCACCTGC TACCACTTAA GAGCGCCGGC GAGAGTGGTG CCTGGTACGA GCAATTTATG
CGCCGCGCCC GGGAGCATTG CCGGCAGAAC TTTCTCTACA GCAAACGTGC GGGACTCAAC
GCGGCGGTGG CCCATGCCAT GGGACTGTTT ACCGCCCTAG CCACAGTGTT TACCGGCATC
TTCCTGGTGC TCAACCAGAG CATCACCCCG GGGGCGCTGA TCGCCTGCGT CATGTTGATC
TGGCGGATCA CAGGCCCGGC GCAGCTGGCC TTTGCCTCGC GGCAGAAGTT TACCCTGCTC
AAGGGCGCCG TCGATCAGTT CGACCGTTTC ATGGGCGTAA CCACAGAGTT CAATGAGCTC
AGGCTCGACT CGCCAAATCT CAACCAGACA CCGGCGCTCT CCTTTAAGCA TGTGACCTTG
AGATACAGCG CCGACAGCGA GCCCGCTCTC TCCGGGGTAA CCCTCGACAT CGAAACTGGC
GAGACGGTGG CCATCATAGG CCCCAACGGC AGCGGCAAGA CCTCGCTGCT GCTCACCGCC
ATAGGAGTTA TCGAGCCCCA GGCCGGCTTC GTCACCGTCA ACGGCAAAAA CCTGAAACAA
TTTGACCCTG AGATCTTCCG TCAGTGGGCC GCCTACAGCC CCACCAACAG CGAGATCTTA
CCCGGCACCC TGGCGGACAA CCTGCGCCTG GCCAAGCCAG AGGCCAGCGA CGAAGAGCTT
AAGCAGGCCC TCACCGATGC CGGCGGCGCC TCGCTGCTGC AGGCGCTAAA ACAGAACATA
GATGCCAACC TCTTTTCCCG TGGCACCAGC ATGTTCTCGG CGGTGGAAAG CAGCTATATC
AGCCTGGCAA GGGCCCTGTT GAAAGGCTCT CCCCTGCTGG TGATGGATGA GCCGATAGCC
AATCGCAATC CCTTTGCCCG ACAGGCCTTT ATCCAGACCC TCAAACGCCT CAAGGGCAAG
ACCACCATCC TGTTCACCAC TCACGATCAG GCGCTGATTC AACAGGCCGA CAAGGTGGTG
ATCCTCGACA AAGGCACTGT GGTCTACGCA GGGCCTCTGC CTAACCAAGA CGGTGTGACG
ACACAAGGTG CAACCAACCA GGACTCAACC CCCAGCATGG AGGCCTCACA AAATGAATGA
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| Protein sequence | MNQHLDPIHL PKSLLIALFH QLGLSVQASN IDKSDLHDRL THLEAYILLK KHHVGIKVQA
LDANLLVHSV YPFILLPQDG EPMVARRSNH SFQYLSKDNQ WLTLDKLPGA GHVFLVESLP
AQSRSSSVFA SHLAKLRPWY RPIFWLSLLS SLSGLAIPLF TMAVYDRVIG GQAPQILPSI
ALGAALALGI FVASRLLRAQ ALANVSNRFA RDLSGITFNR LLSMPLSLLS RVGLSSHIAR
MRNAEKVRSL VAGPGGGGLI DLPFTLIALV AITLLSGVLV LVPLGMLLLF YLVMKALDKF
TQAAAPTISG EYQNSLNELS THLLPLKSAG ESGAWYEQFM RRAREHCRQN FLYSKRAGLN
AAVAHAMGLF TALATVFTGI FLVLNQSITP GALIACVMLI WRITGPAQLA FASRQKFTLL
KGAVDQFDRF MGVTTEFNEL RLDSPNLNQT PALSFKHVTL RYSADSEPAL SGVTLDIETG
ETVAIIGPNG SGKTSLLLTA IGVIEPQAGF VTVNGKNLKQ FDPEIFRQWA AYSPTNSEIL
PGTLADNLRL AKPEASDEEL KQALTDAGGA SLLQALKQNI DANLFSRGTS MFSAVESSYI
SLARALLKGS PLLVMDEPIA NRNPFARQAF IQTLKRLKGK TTILFTTHDQ ALIQQADKVV
ILDKGTVVYA GPLPNQDGVT TQGATNQDST PSMEASQNE
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