Gene Shew_0469 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0469 
Symbol 
ID4921964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand- 
Start bp526823 
End bp527494 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content59% 
IMG OID640161998 
Productpentapeptide repeat-containing protein 
Protein accessionYP_001092600 
Protein GI127511403 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0713462 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATGATT TGCAACACGA GACGCTTGAA CGGGATTACT TTGAGCATGA CTTCAGCGGT 
AAAGATCTGC AGGGGCTACT GTTTCGTCGC TGCCGCTTCG TGCGCTGCAG CTTTAACCGC 
GCGGATTTGA CCGACTGCCA TTTCAAGCAG TGTCAGTTTG TCGAGCCCGG CGATCTGCTG 
GGGTGTGATT TTAGCTACGC CACGCTGATC AACGCCAAGT TCAGTGACTG TCGCCTCAAC 
CTGGCGCGCT TCACCGGTGC CCGCTGTTTC GGCGCCGAGT TTCGAGCATC CAACCTGCAG 
GGCGCCGACT TCTACCGCGC CAGTTTCGCC AATCAAATCG GCATCAATCA CTACTTCTGC 
AGCGCCGTAT TCAGCGGCTG TAACCTCGCC TATGGCAACC TGTCTCAGGT GATACTGGAA 
GAGTGCGAAC TGACCGACAA CCGCTGGCGC GGCGCCAACC TGACCGGGGC ATCGCTTAAG 
GGCAGTGACC TCAGCGGCGG CGAGTTTAGC CCTGAGCTGT GGGGCGAGTT CGATCTCAGG 
GGCGCCAACC TGACAAGGGT GGATCTCGAG GGGTTGGATC CCCGCGAGGT GGCGCTGGAA 
GGGGTGATGA TAGACGCCTG GCAGCAGAGT CAGCTGCTGG CGCCCTTTGG CTTAATCGTC 
TGCGGCGAAT AG
 
Protein sequence
MDDLQHETLE RDYFEHDFSG KDLQGLLFRR CRFVRCSFNR ADLTDCHFKQ CQFVEPGDLL 
GCDFSYATLI NAKFSDCRLN LARFTGARCF GAEFRASNLQ GADFYRASFA NQIGINHYFC 
SAVFSGCNLA YGNLSQVILE ECELTDNRWR GANLTGASLK GSDLSGGEFS PELWGEFDLR 
GANLTRVDLE GLDPREVALE GVMIDAWQQS QLLAPFGLIV CGE