| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0398 |
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| Symbol | |
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| ID | 4923239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 447919 |
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| End bp | 448368 |
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| Gene Length | 450 bp |
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| Protein Length | 149 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161927 |
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| Product | MSHA pilin protein MshC |
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| Protein accession | YP_001092529 |
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| Protein GI | 127511332 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.556071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATAAAC AACAAGGTTT TACCCTTGTG GAGCTGGTCA CTAGCATCAT CTTGATTGCC
ATTTTATCTG TGGTGGTCTT GCCGCGCTTC TTTACCGCCT CTAGCTACAG CGCCTATACC
CTGAGAGACG AACTGATTAG CGAGCTCAGG CGAGTTCAGC TGATGGCGCT GAATAACCTG
GATCGCTGCT ACAAGGTGAG CGTGACGGCG ACAAGTTATC GTGCCGACAT CTTTGGCGCC
GACTGCAACA GCCTGACGGT CACTGGCAAT GCCCAGTCGC TACCCCGACA GACAAGCCTG
AGTTTAGGTG GCTTGAACAG CTTCACCCTG ACCTTCGACC GTGATGGCAG GGTGACCGGC
AGCTGTGCTA CGGGCTGCAC CATCAAGGTT GCAGCCGATG AAACCTTAGA CCTCAGCATA
GAGAGCCAGG GGTATATTCA TGGACGCTAG
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| Protein sequence | MNKQQGFTLV ELVTSIILIA ILSVVVLPRF FTASSYSAYT LRDELISELR RVQLMALNNL
DRCYKVSVTA TSYRADIFGA DCNSLTVTGN AQSLPRQTSL SLGGLNSFTL TFDRDGRVTG
SCATGCTIKV AADETLDLSI ESQGYIHGR
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