| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0347 |
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| Symbol | |
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| ID | 4922599 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 394380 |
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| End bp | 396371 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161875 |
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| Product | cytochrome c assembly protein |
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| Protein accession | YP_001092478 |
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| Protein GI | 127511281 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAGCT TGGTCCCCTT GGCTGAAGGC GAGACCATGA CAGCGGAAAT TGGCTTACTA
CTTCTTATTA TCTCCTTGAC CCTGTGTTTA CTCACGGCCA TGAGCCCTGT CATGCCTGCC
TGCGGGGTCA AACTCAGGCT TAAGCCTTAC CAGCCCCTCT TTATTCGCCT TAATAGCTTG
GCGCAGGTGG CTAGCCTGTT TATCCTGGCC TATCTGTTTC TCAGCAACGA TTTTTCCGTG
GCCTATGTGG CCAACAATTC CAACACCCAG CTGGCCAGCC TCTATAAGCT AGCCGCCGTC
TGGGGGGGTC ACGAAGGCTC TATGCTGTTC TGGATTGGCG CCATGGGGAT CTGGAGCTGC
GTGCTCAGCC TCCAGCCCAA CCACAAAGAC CGGTTTTTTC ACTACCTCCA CGCCGTGCTG
GGCGCCATTC AGGCCGGCCT AATCGCCTTC TTGCTCATAG GATCGAATCC CTTCGCCAGG
CTTCTACCCG GCATCCCGGT GGAGGGGCGG GATCTCAATC CCATACTGCA GGACATAGGC
TTAATTCTGC ATCCGCCGCT ACTCTTTATC GGCTATGTGG GACTGGCGGT CTGTTTCGCC
GCAGCCATCG CCGCCCTGCT GGATAACAGT CAGCCGCTAA AGCAGCACTG CCGATTGATG
CGCCCATGGG CGATACTGGC CTGGGCCATG TTGACCGGCG GCAACGCCTT CGGCTCCTGG
TGGGCCTACA ACGAGCTGGG CTGGGGCGGA TGGTGGTTCT GGGACCCGGT GGAAAATGCC
TCCTTTATTC CCTGGCTGGT CGCCACGGCG CTGATGCACT CATTAATCTT GGGCGAACGT
CGAGACAGAT TTCATGGCAC CAGCCTGTTC CTGGCAATCT TAGGCTTCAG CCTCTGCCTG
CTGGGCACCT TCCTGGTGCG CTCAGGTGTG GTGCAATCGG TTCACGCCTT CGCCGCCGAT
CCCCTGCGCG GTGGCGCCAT GTTGACTTTG TTTGCCCTGG TCTCTATCTG CGGCTTTACC
CTGCTGCTGC AGCGCCTCCC TAGCCTCTAC CGACCGGTAA ATAGCAATAT GCTGAGCCGG
GAAAGCCTGA TGCAGCTGGG CAATCTCTTA TTGCTGGTCG CCGCCATCTC CATCTTACTG
GGCAGCTGCT ATCCGCTGCT CTATGAGGTA GCAAGCGGTC AGAGCATCTC GGTGGGCGCC
CCCTACTTTA ATAGCCTCTT CATCCCGCTG ACCTGGCTTA TCTGTCTGGT CATGGGCGCC
GCGCCTTTGA TGCGCTGGCA AGTATCAAAC CCTGGCATGC TAAGACAGTT AACGGCGCTG
GCAGCTATCT GCCTGTTTAT CGGCCTCACT CTCAATACTC TGCTGCTGAA AGAGTTTGCC
GCCCACTTCC TGCTTGGTAG CTTCGCCTGC CTCTGGCTGC TCGGCTGTAC TGGGCTCTAT
CTGCATAAAC GCCTGGCGGC GTACACAGGC GCGGGGGATA ACAGGCGCTG CTACGCCATG
AGCTTTGCTC ACCTGGGTGT GGCGCTGAGC ATACTTGGGG CCACCTGCTC CAGCTATTTT
CAGCAGGAGG AGCTACTCAG GATGGGGCCG GGTCAAGGCA AGGAGGTGGC GGGCTATACC
TTTATCTACC GGGCGACCGA AACCGTTTCC CACACCAGCT ACAGTGCACT TCAGGCAAAG
ATAGAGGTGA GAGACAGACG CGAGCAGCAT CTTGCCTATC TCTATCCCCA GCGTCAGACC
TTTAACAGCA ACGCCATGCA GATCTCCGCC GCCGGGATCC ATCGCAGCCT GTTTGCCGAT
CTCTATATCT CCATGGGCAA TAGGCTGAGC GAGGAGGAGT TTCTGATCCG CATCAGCTAC
AAACCCCTGA TTGGCTGGAT CTGGATAGGC GGCCTCATCA TGATGTTTGC CGGCCTGAGC
CTGCTGCTGC CACGCAAGGT GCGCCGACTG TCTCGGGCGC CCTCGCCGCA ACTGGCGGTG
AAAGGAGCCT GA
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| Protein sequence | MSSLVPLAEG ETMTAEIGLL LLIISLTLCL LTAMSPVMPA CGVKLRLKPY QPLFIRLNSL
AQVASLFILA YLFLSNDFSV AYVANNSNTQ LASLYKLAAV WGGHEGSMLF WIGAMGIWSC
VLSLQPNHKD RFFHYLHAVL GAIQAGLIAF LLIGSNPFAR LLPGIPVEGR DLNPILQDIG
LILHPPLLFI GYVGLAVCFA AAIAALLDNS QPLKQHCRLM RPWAILAWAM LTGGNAFGSW
WAYNELGWGG WWFWDPVENA SFIPWLVATA LMHSLILGER RDRFHGTSLF LAILGFSLCL
LGTFLVRSGV VQSVHAFAAD PLRGGAMLTL FALVSICGFT LLLQRLPSLY RPVNSNMLSR
ESLMQLGNLL LLVAAISILL GSCYPLLYEV ASGQSISVGA PYFNSLFIPL TWLICLVMGA
APLMRWQVSN PGMLRQLTAL AAICLFIGLT LNTLLLKEFA AHFLLGSFAC LWLLGCTGLY
LHKRLAAYTG AGDNRRCYAM SFAHLGVALS ILGATCSSYF QQEELLRMGP GQGKEVAGYT
FIYRATETVS HTSYSALQAK IEVRDRREQH LAYLYPQRQT FNSNAMQISA AGIHRSLFAD
LYISMGNRLS EEEFLIRISY KPLIGWIWIG GLIMMFAGLS LLLPRKVRRL SRAPSPQLAV
KGA
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