| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0311 |
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| Symbol | |
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| ID | 4924282 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 337305 |
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| End bp | 338687 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640161839 |
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| Product | HlyD family type I secretion membrane fusion protein |
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| Protein accession | YP_001092442 |
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| Protein GI | 127511245 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTAAGC ACTTAACGAC TCAAGACCTC GAGATGGTCG ATGACGTCTA TGGCGCCATG
ATGACAGATG CGCCCACCAG CCACAGGCTG ATCATCTGGG CCCTGGCCGC CCTCGCCTTC
AGCTTCCTGG TATGGGCCTA CTTTGCCGAG CTCGACCGGG TGACCACAGG TACGGGCAAG
GTGATCCCCT CGTCTCAGGT GCAGGTGATT CAGAGTCTGG ATGGCGGCAT CATGAAAGAG
CTCTATGTCC GCGAAGGCAT GACGGTCACC AAGGGCCAAC CCTTGGTTCG CATAGATGAC
ACCCGTTTCC GTTCAGACTT CGCTCAGCAG GAGCAGGAGG TCTACAGCCT GCAGGCCAAC
GTTATTCGTC TGCGCGCCGA GCTTAACAGC ATCACCATCT CAGATGTCGC CGCCGACTGG
CGCGAACAGG TGAAGATCGC CAAGCAGCCG CTACAGTTCC CGCCTGAGCT GACCGAAAGC
GAACACGACT TAATCGAGCG TCAGCGCGAC GAATATTCGG GCAGACTGGA CAACCTGAGC
AACCAGCTGG AGATCCTGGC GCGCCAGATC CAACAGAAAC AGCAGGAAAC CGAAGAGCTG
GCCTCTAAGA TCAACACCCT GACAACCAGC TTCCAGCTGG TGACCCGCGA GCTCGAGCTA
ACCCGCCCGC TGGCAGACAA GGGGATTGTG CCCGAGGTCG AACTGCTCAA GCTTGAACGT
AACGTCAACG ACATTCGCGG CGAGCTGAGT TCTCTCAGGC TACTCAGGCC TAAGCTCAAG
GCATCACAGG ATGAAGCCAT CCTGAAGCGC CGCGAGGCCG TGTTCGTCTA CGCCGCCGAG
GCCCGCACCC AGCTCAACGA GATGCAGACA CGTCTGTCGC GCATCAACGA GGCCCAGGTG
GGCGCGCGCG ATAAGGTGAG CAAGGCCGAG ATAGTGTCGC CGGTAAATGG CACCATTAAG
ACAGTTCATA TCAACACCTT AGGTGGTGTT GTACAGCCTG GCATCGACAT CATTGAGATA
GTGCCATCGG AAGATCAGCT GCTGATCGAA ACCAAGATCA TTCCGAAAGA TATCGCATTT
TTACATCCTG GCTTACCCGC CGTTGTCAAA GTTACCGCCT ACGATTTCAC GCGTTACGGT
GGCCTCAATG GCGTTGTGGA GCACATCAGT GCCGATACAA CACAGGACGA AGAGGGAAAC
AGTTTCTATC TTGTAAGGGT TAGAACTGAA CTATCAAGTT TGACGAAAGA CGACGGCACC
CTGATGCCCA TCATACCTGG CATGTTAACC ACGGTAGATG TCATCACTGG GCAAAGATCC
GTTCTGGAGT ACATACTTAA TCCAATTTTG AGAGCAAGAG ACACTGCTCT GCGTGAACGT
TAA
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| Protein sequence | MSKHLTTQDL EMVDDVYGAM MTDAPTSHRL IIWALAALAF SFLVWAYFAE LDRVTTGTGK
VIPSSQVQVI QSLDGGIMKE LYVREGMTVT KGQPLVRIDD TRFRSDFAQQ EQEVYSLQAN
VIRLRAELNS ITISDVAADW REQVKIAKQP LQFPPELTES EHDLIERQRD EYSGRLDNLS
NQLEILARQI QQKQQETEEL ASKINTLTTS FQLVTRELEL TRPLADKGIV PEVELLKLER
NVNDIRGELS SLRLLRPKLK ASQDEAILKR REAVFVYAAE ARTQLNEMQT RLSRINEAQV
GARDKVSKAE IVSPVNGTIK TVHINTLGGV VQPGIDIIEI VPSEDQLLIE TKIIPKDIAF
LHPGLPAVVK VTAYDFTRYG GLNGVVEHIS ADTTQDEEGN SFYLVRVRTE LSSLTKDDGT
LMPIIPGMLT TVDVITGQRS VLEYILNPIL RARDTALRER
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