| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0307 |
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| Symbol | |
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| ID | 4923941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 332601 |
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| End bp | 334523 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161835 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001092438 |
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| Protein GI | 127511241 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.068585 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGT TTCGACAGAT ATACTCACTG CTTTTTGGCC TGTTCTTGGT CGTTGTCATC
AGCCTGGCTT ATGTCCAATT TACCGAGACA CAAAGCTTTC TGACCAAGCA GATGGAGTCC
GATCTCAATA ACACCAGCCA CAGTCTGGGG ATCATGCTGG TTCCCGATCT GGAAGCGGGT
GATATTGTCG GCGCCGAGAC GCTGATCAAC GTCATCTTCG AAGGCGGCTA TTACCAACAG
GTGAAGCTCA CCTGGCTGGT CGACGGCAAA CAACAGGTGT GGGAAAACGA CGTTAAAATC
GAGGGTGTTC CCCAATGGTT TATCGACCTG GGATTCTTCG AAACCATTAA ACGCGAAAGC
ACCATCACCT CGGGTTGGAT CCAGTTAGCC AACCTGGAGA TCACCGCACA CCCAGGCTTT
GGTTACAACG AGCTGTGGCG CACCCTAACC AACGCCATCA TAGTCATCTC TATCCTGTTT
TTACTCGCCA TCATGCTGGC GCGCTTCGGG CTAACCTGGA TCCTAAGACC ACTGCATGAG
ATCGCCGAGC ACGCGGCCGA GATCGCCCAG CGCAAGTTTG GCCCTGACAT GGCCATTCCA
AAGACCTCAG AACTCAAGTC CGTGGTCGAG GCCTTTAACA GCATGTCTCA TCAGCTCAAG
CAGATCTTCA GCTCACTGGA CGAAGAGGTG ACTGAGCTGC GTAAGAAGAA CCTGGTAGAT
CAGGTCTCTA AGCTGCCTAA CAGGCAATAT ATGATGGGCC GCCTCAACAG CTGGTTAAGC
GAACCCAACA ATGGCTCGCT GATGATGGCC AAGTTCGACT GGCTCGAAGA GGTACACAGC
AAGTATGGTT ATCAGGTACG TGATGAGACC ATACGCCTGT TGTCCGAGAA GATGCAGGAG
CAACTGGACG AGATCGCTCC GTCTGTCATC GCCCGTATCG CCGCCTACGA ATTTGCCTTC
CTGATCACCA GCGCCGAACA GGAGCAGAGC AGCAAGTATC TGCATACCCT GATTAGAACC
GTGAATCAGG AGATCTCTAA GGCGGGCTGT AAGCCCAATG AGCAGTTTGC CATAGGTATC
GCCCAGCGCA CCGACAACAT GACGGTATCG GACATCCTGG CGCAGACGGA TAATGCATTG
CAGAAAGCAA TCGCCGACAA CAAGGTGTTC CACTGGTTCG AGAGCAACGA GAAGCAGCTC
TACACCCGTG AGCAGTGGCG AGAGCATTTG AGTGCCGCCA TCAGCAGCAA GCAGTTCCAG
TTCAAGTGGC AGCCTGTCTA TCACACCAAT AAGGATGAGG TGGTGCAGCG CGAGCTTTAC
TGTCAGCTCA CCATTGGCGA TAAAGAGATC CACGCAGGCC AGTTTATGCC CTATGTGGAG
CTGCTCTCAC TGGGCTCTAT GCTGGACAGA TGCCTGATCG AGACCATAGT CGATAACGGA
CTGCTGGAGC GTAACTATGA GCCTATCGCC ATCAACCTGA CCTTCAACAG TCTGAGCGAT
ACGACCTTCC ACCAGTGGCT CAACAAGTTC CTGCGCAATA CGCCGCTCGC CCAGCGAATC
GTGTTCGACA TCCCTGAAGC CGGCGTCTAT AGCGATCCCG ATGCCTGCCA GGCGCTATGC
AACATCATTC GCGACAATGG TGCTCACTTC GGTATCGACC ACTTCGGTCG TCAGTTTGGC
TCTATGTCTT ACCTGCAAAA CCTAAGACCT AGCTACGTCA AGCTGGATCA GTCCTTCGCC
TACTATGACG AGAACGAGCA CAACAGCGAG CTGTGCCGCG CCCTGGTGAA CGTCGCCAGA
GGCCTAGATA TCCAGATCAT CGTCACCGGT ATTCAGGAGC AGCCGCAACT AGCACGCTTC
GAGCCGCTCA AGGCCAACGC CTACATGGGC TATATCTACC CGCCCACCCG CGTCGAGCTA
TAA
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| Protein sequence | MTLFRQIYSL LFGLFLVVVI SLAYVQFTET QSFLTKQMES DLNNTSHSLG IMLVPDLEAG
DIVGAETLIN VIFEGGYYQQ VKLTWLVDGK QQVWENDVKI EGVPQWFIDL GFFETIKRES
TITSGWIQLA NLEITAHPGF GYNELWRTLT NAIIVISILF LLAIMLARFG LTWILRPLHE
IAEHAAEIAQ RKFGPDMAIP KTSELKSVVE AFNSMSHQLK QIFSSLDEEV TELRKKNLVD
QVSKLPNRQY MMGRLNSWLS EPNNGSLMMA KFDWLEEVHS KYGYQVRDET IRLLSEKMQE
QLDEIAPSVI ARIAAYEFAF LITSAEQEQS SKYLHTLIRT VNQEISKAGC KPNEQFAIGI
AQRTDNMTVS DILAQTDNAL QKAIADNKVF HWFESNEKQL YTREQWREHL SAAISSKQFQ
FKWQPVYHTN KDEVVQRELY CQLTIGDKEI HAGQFMPYVE LLSLGSMLDR CLIETIVDNG
LLERNYEPIA INLTFNSLSD TTFHQWLNKF LRNTPLAQRI VFDIPEAGVY SDPDACQALC
NIIRDNGAHF GIDHFGRQFG SMSYLQNLRP SYVKLDQSFA YYDENEHNSE LCRALVNVAR
GLDIQIIVTG IQEQPQLARF EPLKANAYMG YIYPPTRVEL
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