| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0274 |
|---|
| Symbol | |
|---|
| ID | 4920764 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 291207 |
|---|
| End bp | 292340 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640161798 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092405 |
|---|
| Protein GI | 127511208 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000246536 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAA AGACCACTCA ATTTATGTTG TCCATGGTCG CCACCGCGAT AGCCCTCTCA
GCTTCTACGG CGTATGCCCA GGAGCAAGAA GATGGCATCA ATGTCGGCGG CGCGGTACGT
GTTAACTATG GTTACAAAGA CTATAGCGAG GCCTCTAAAG ACAAGGGCGG CGACCTGACC
TTCGATATGG CCGCCATCAA GTTTAACGGC AAGAAAGGTG ACTGGGGCCT GGCGGCAGAA
TACCGCTTCA CCTCAAGCAC AGACTATATC AAATATGGCT ATGGCTACTA CAACATAGAC
CCAGACTGGC AATTACAGTT CGGTATCAAC AAGGTGCCTT TTGGTAACCG CGACTTCATC
TCTAACAGCT GGTGGTTCGG TATCCCTTAC TACCTAGGCT TCGAAGATGA TCATGATGTG
GGTATCAAGG CCGTGTATGA GAAAAATGGC TGGCACACAG ATCTGGCCTT CTACAAGAAC
CCGGAGTACG GCCCGACAGA GAACAAGCGC TACGCCACCG ATCTCTACAC AGGCACCATC
AACGGCACCG AGTATCACAA CGAAGAGACT AACCAGTTCA ACGTGCGCCA AACCTATACC
CTGGAGCATG AAGGCGGATC GACGACGCTA GGTGGCTCTG TGCAATATGG TCAGATCTAC
AACAGCAAAA CGGGCAACAA CGGCGACCGC TATGCCGTAG CCCTGCACCT AGACAGCAGC
TACAAGGGCT GGAACCTTCA GCTACAGGCG ATGCAGTATG AATATGACGC CGCCGACGCC
GTAGATCCCA ACAAGATAGG TGTCTCTGTG GTGAGCTGGC AGTATGAGAT CGCCTCCAAG
GGCCAGGCCT ACAGCGCCAA CATCGCCAAG ACCTTCGACA CCGACTGGGG TAGCGTGAAG
TGTTACAACG ACTTTGGCGT GATGACCCCG GATGTCGCCG ACAACAGCTA TGACAACAGC
ATGCAAAACG TCACCGGCTG CGCCATTGCG GCAGGCCCAA CTTACACCAT GGTCGATTTC
GTCATGGGTA AGAACATGAC CTTCTCTACC GCCAACAACG ACCATGTGGG CCTCCCGGAG
GTCGGCAACG ACTGGGACAA ACGGGTCAAC ATCAACTTCG GTTACTACTT CTAA
|
|---|
| Protein sequence | MMKKTTQFML SMVATAIALS ASTAYAQEQE DGINVGGAVR VNYGYKDYSE ASKDKGGDLT
FDMAAIKFNG KKGDWGLAAE YRFTSSTDYI KYGYGYYNID PDWQLQFGIN KVPFGNRDFI
SNSWWFGIPY YLGFEDDHDV GIKAVYEKNG WHTDLAFYKN PEYGPTENKR YATDLYTGTI
NGTEYHNEET NQFNVRQTYT LEHEGGSTTL GGSVQYGQIY NSKTGNNGDR YAVALHLDSS
YKGWNLQLQA MQYEYDAADA VDPNKIGVSV VSWQYEIASK GQAYSANIAK TFDTDWGSVK
CYNDFGVMTP DVADNSYDNS MQNVTGCAIA AGPTYTMVDF VMGKNMTFST ANNDHVGLPE
VGNDWDKRVN INFGYYF
|
|---|
| |