| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0253 |
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| Symbol | |
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| ID | 4923667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 271884 |
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| End bp | 272990 |
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| Gene Length | 1107 bp |
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| Protein Length | 368 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640161777 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_001092384 |
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| Protein GI | 127511187 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.195856 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATA ACAATGTCCA CACCAGTGCT GAACAAAGCG ATAAAAAAAT TAGCCAAGCT
CGCTCTTTCA CTTACTACAT TTTTGCCTTA GTTGCTGCTC TTTGGCTTTA TACCTTATGG
GCGGACAGAA TGACGCCAAT GACAGATCAA GCTAGAGTAA ATGGCCAATT GATCCGCATT
AGCCCAGAAG TATCTGGCCC TATTTCACAA GTACTTATTA CTAACAATAG TATTGTCAAG
GCAGGAGATG AACTCGTCAC GATCGATCCG CGTCCTTTTG AATTAGCCGT TAAGGCCGCC
AAATTTGATT TGCAACAAGC AGCTCAGTCT TATGAAGCGG ATTCAGCAGC AATCAGTGTC
GCTCAAGCAA ATGAAGTCGC AGCTCGTGTT AAGGTCAATA ATGCCAAGAA GAATGTGGAG
CGTAATCGCG TACTTGCCAA TAAAGGAACG ATAAGTCAAG CGGTAATGGA TAACATAATC
GCCGAACTAG AGACGGCCCA AGCGGGGTTG GCTCAAGCGT CATCAGCACT AGAAAAAGCG
AAACAAGAGT TTGGCCCGAG AGGAATTGAT AACCCTGAAA TCCAATCGGT ATTAAACCGA
CAAGAGCAGG CTCTACTAAA CCTCAATCAC ACCAAACTGA CAGCACCTGC TAATGGTGTG
ATCACTAATA TGGATGTTGC TGTTGGCGAT TATGCTGCTG CTGGGCAGCC ACTTCTTACC
TTTATCAATA ACAACAACTT ATGGCTGACG GCCATGGTGA GAGAGAATTC ACTGGCTCAT
CTAAAGCCTG GCGATAAAGT CAAAATTGTT TTTGATGCAA CCCCAGGAGA GGTCTATGAA
GGAAAAATTT CTTCAATCGG TTGGGGAAGT AGCGGTAATG GTAGCCTTGC CCAAGATGCC
AGTAATGGCC TTATGACCTC ACCAACAAGC AGTTCAAAAG CACAGCGTTT CCCCGTCAAT
ATCGAGTTCA CTTCGTTGCC TGCCGATCTA AATCTGAGAT ACGGTGGTCG AGCTGTGGTG
GGTTTCTACC CTGATGAAAG CTACCTAGGT GAGAGACTAC AAGATTTGTG GATCTGGGCA
TGGAGTTATA TCAGTTATGT ATCATAG
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| Protein sequence | MSDNNVHTSA EQSDKKISQA RSFTYYIFAL VAALWLYTLW ADRMTPMTDQ ARVNGQLIRI
SPEVSGPISQ VLITNNSIVK AGDELVTIDP RPFELAVKAA KFDLQQAAQS YEADSAAISV
AQANEVAARV KVNNAKKNVE RNRVLANKGT ISQAVMDNII AELETAQAGL AQASSALEKA
KQEFGPRGID NPEIQSVLNR QEQALLNLNH TKLTAPANGV ITNMDVAVGD YAAAGQPLLT
FINNNNLWLT AMVRENSLAH LKPGDKVKIV FDATPGEVYE GKISSIGWGS SGNGSLAQDA
SNGLMTSPTS SSKAQRFPVN IEFTSLPADL NLRYGGRAVV GFYPDESYLG ERLQDLWIWA
WSYISYVS
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