| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0242 |
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| Symbol | |
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| ID | 4922438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 257861 |
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| End bp | 260074 |
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| Gene Length | 2214 bp |
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| Protein Length | 737 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161766 |
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| Product | molydopterin dinucleotide-binding region |
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| Protein accession | YP_001092373 |
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| Protein GI | 127511176 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATGA ACAGACGCAC CTTCTTGCAA GGTGTCGGAG CCAGCTCCGT CGTCGGCTCG
CTATCCGGTC TTATGCCCGG CATAGCCAGT GCAGGCGAAA AAGGCGGCGC GCCCGACAAA
CTCTTGAAAC GCCAAGGAGA AATTAAGTAC CACACCTGCC AACGTAACTG CGCCGACCGC
TGTCTGTTGA AGTTCACGGT ACAAAACGGC CGCATGACCT ACGTGGAAGG CGCTTCAGAG
TTGAAGAAGA TGGGCACCTC TCCCTGCGTG AAAGGCCATG CCTATGTGCA ATACACCTAT
GCCGCCGACC GTATCCTGCA CCCGATGGAA CGCGCGGGCA AGAAGGGCGA AGGCAAATGG
CGCCGCATCT CTTGGGATGA GGCCTATGAC AAAATAGCCA GCCGTCTGCA GCAGATCATC
AAAGATCACG GCGCCGACTC TATCCTGCCC TACAGCTACT CGGGCCACGA AGGGGTTATC
GGTAAATACG GCGGACCTAG CCGCTTCTTC AACGCCGTTG GTGCCCGCAA GCTCGACCGT
AAGGTGTGTG TGTTCGCCGC CTATGAAGGC TTGAAGTCGG TGACAGGTAC CTACCAGGGC
CCGGATCCAT ACGACAACAT CTATACCAAC TGCTACATCT CTTGGGGCCA GAACGAGACG
GCCACCAACG TGCACGGCAT CAAGTTCATC AACCAGGCCC GTGACCGAGG TGCCAAGCTG
TTGGTAGTTA ACCCAGTGCG CACCCCTATC GCCTCTCAGG CCGATATCTG GTTGCAGCCT
AAGCCGAGTA CCGACACCCA CCTGGCGACA GGTATCATGA AGTACCTGGT AGAGCATGAC
CTAGCGGATC TCGAGTTCAT CAAGGCCAAC ACCCTTGGCT ATGACCAGCT GCTCGAGCGC
CTCAACACCA TGAGCTACGA AGAGATCGAG CGTGTCACCG GCGTGCCTAA GGCCAAGATG
TTCGAATTCG CCCGCGTCTA TGGCGAGTCA GAGCTGTCTG TACTGCGTCT GGGTTACGGT
ATGCAGCGTA ACTACAACGG CGCCCGTATG TCTCGCGCCA TCGCCATGAT GCACGCGGTT
GCCGGCCAGT ACGGCAAGAT AGGTAACGGC TTCATCTATG ACAACACCCA GGCCGATGAC
AGCCTGAACT ACAGCAAGGG CCGTGCGGAT CATATCCACC CGAACCCAGA CACAGTAGGC
CACGTCAACA TGACGGAGAT AGCCAAGGCG CTCGACCCAG AGAACCCAAT GGCCTATGGC
AAGCCGATCA AACCGATTAA GGCGGTGATC AACTACAACG GTAACTTCGT CTCGGTTGCA
CCGGACTCGA ATGCCTGTCG CCGCGGCGCG ATGCGTGATG ACCTCTTCCT GGTGGTTCAC
GACTTCCTGA TGACAGACAC CGCAGAGCTG GCCGATATTA TCGTACCGGC TGCGACCCAG
TTCGAGTTCC CAGACATGGG TACCGACTAC AACTGCTATC ACATGCAGAC CTCTGAGAAG
GTGATCGAGC CACTCGGCGA GTCGAAAGAC AACTGGATCT TCTTCAAGGA GCTGGGCGCC
CGCATGGGGC TAGACCGCTT CCCTGAGATG CGTGTGGACT ATGAGCAGAT CCTGCGTGAC
TTCCTCGACA CGGAAGAGCC CGCCTTCAGA CACAATAACA TCACCTATGA GCAGATCATT
CGCGACAAGT TTGTCACCGT ATATGACCAA CGCCCTTACT TCGGCGATGG CAAATATAAG
ACGCCAAGCG GCAAGATCGA ATTCTACTCA GAAATGATGA AAGAAGCCGG CTACCACCCA
GTGATCGACT TCGGCCTGCC GGAAGATGAG ATGGTACAGG AAGAGAAGAC ACTGCCGTTC
CGTCTGCTGT CTCCTGCCAT TCCGCAGCGT GCCAACAGCT CTTTCTACAA CGTGAAGTAC
ATTCGTAACT TCCCGGCCTA CTTCGCCAAG ATCAACGCCG AAGATGCCAA AGAGTTGGGC
ATTCAGAACA ACGACAGGGT AAGGCTCAGC AACCAACGTG GTGAGGCCCA CTTTATCGCT
CAGGTTTCTA CCCAGGTGGT CAGAGGAACA GTTATGGCGC CGAAGAATAA CTGGCGTCGC
ATGGACCCAC AGGGCAAAGA CAGCTGTACC AACAACCTCA CCACCGACAC CTTGACCGAT
ATGGGTGGAT GCTCTGCGTA TCATTCCACT CGCGTCGCGA TTGCCAAAGC CTAA
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| Protein sequence | MKMNRRTFLQ GVGASSVVGS LSGLMPGIAS AGEKGGAPDK LLKRQGEIKY HTCQRNCADR
CLLKFTVQNG RMTYVEGASE LKKMGTSPCV KGHAYVQYTY AADRILHPME RAGKKGEGKW
RRISWDEAYD KIASRLQQII KDHGADSILP YSYSGHEGVI GKYGGPSRFF NAVGARKLDR
KVCVFAAYEG LKSVTGTYQG PDPYDNIYTN CYISWGQNET ATNVHGIKFI NQARDRGAKL
LVVNPVRTPI ASQADIWLQP KPSTDTHLAT GIMKYLVEHD LADLEFIKAN TLGYDQLLER
LNTMSYEEIE RVTGVPKAKM FEFARVYGES ELSVLRLGYG MQRNYNGARM SRAIAMMHAV
AGQYGKIGNG FIYDNTQADD SLNYSKGRAD HIHPNPDTVG HVNMTEIAKA LDPENPMAYG
KPIKPIKAVI NYNGNFVSVA PDSNACRRGA MRDDLFLVVH DFLMTDTAEL ADIIVPAATQ
FEFPDMGTDY NCYHMQTSEK VIEPLGESKD NWIFFKELGA RMGLDRFPEM RVDYEQILRD
FLDTEEPAFR HNNITYEQII RDKFVTVYDQ RPYFGDGKYK TPSGKIEFYS EMMKEAGYHP
VIDFGLPEDE MVQEEKTLPF RLLSPAIPQR ANSSFYNVKY IRNFPAYFAK INAEDAKELG
IQNNDRVRLS NQRGEAHFIA QVSTQVVRGT VMAPKNNWRR MDPQGKDSCT NNLTTDTLTD
MGGCSAYHST RVAIAKA
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