| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0238 |
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| Symbol | |
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| ID | 4921908 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 254419 |
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| End bp | 255507 |
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| Gene Length | 1089 bp |
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| Protein Length | 362 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161762 |
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| Product | porin |
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| Protein accession | YP_001092369 |
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| Protein GI | 127511172 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACC ATAAGATTAT TTTTCGCACC TCAATGATCG CCGCCGCAAT GGCACTCGCT
TCGACTCAGG GTTATGCCGC CGAGCAGCCC TTGAGTGAAC AGGTCGAGGC ACTCAACCAG
CGCATCGCCC AACTAGAAGC CCAAGCCGCG CCGTCACAGT TCAAGAATAG CGAAGTCAGC
CTGTACGGCT CTATCCGTCC GACACTCAGC TACCTCGACG ACAGCACTGA TGAAACCTGG
GATGTGAGAG ACGCCCTCTC TCGCGTCGGC ATCAAGGCCA GCACTGAGTT TGCCGACGGC
TGGCGCGCCA TCGCCCAGGG TGAATGGAGT GTCGATATCG CCAACTCTGG TAACTTCGGC
AAGGCGAGAC AGGCCTATGT GGCCATCGCA TCCCCCTACG GCCAGGTGGG CATAGGTAAA
CAACGTCCGG CCCAATACAG CCTGATCGCC GAATACGTGG ATATCTTCAA CCACGGCAAC
AGCCCTTACG CCTACGACCA TGAAAGTCCC TTCTTCGTCG ACAACTTCGT GACCTACAAG
CTGGTCACTG GCGGCTTCAC CTGGATGGCC GGCGCCCAGT TTGACGGCGA TAAGGGCGAC
ACAGGCGCGG ATTTCGTCAA CATAGGCGTA GGTTACGATG TCGGAGCCCT GCATTTGGGT
CTGGGCTATG TCACTCAAGA CAGTTTGGAG AACGGCCAGG TAAACGGCGA CAACCAGACT
CTGGGCGGTG TGGTGGCCTA TACCTTCGAT AACGGCCTCT ACCTGGCGGC GAGCTACCAG
GACAAGCAAT ACAACTTCGA TAATCAGGTG CAACATGGCG ATCGCAGCGG CAGCACCTTA
GATACCGCCC TAGCCTATCC ACTGAGCAAC GAGTACAAGA TCAAGCTGGG CTACTTCCAG
TTTAAAGACG GTATCGAGGA TATCAGCTCT ATGGACTATG ACGGTTTCAA CACCACGCTG
GAATGGAACC CGCTGGCCAA CGTGCGCGTA CACCTTGAGT ACCTGGATAA GAACTACGAC
AACCTAAACG ACGATCGCGC CGTTACCGTC GGCTTCCGCT ATGACTTCAA CTTAAACTGG
AAAGGCTAA
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| Protein sequence | MKNHKIIFRT SMIAAAMALA STQGYAAEQP LSEQVEALNQ RIAQLEAQAA PSQFKNSEVS
LYGSIRPTLS YLDDSTDETW DVRDALSRVG IKASTEFADG WRAIAQGEWS VDIANSGNFG
KARQAYVAIA SPYGQVGIGK QRPAQYSLIA EYVDIFNHGN SPYAYDHESP FFVDNFVTYK
LVTGGFTWMA GAQFDGDKGD TGADFVNIGV GYDVGALHLG LGYVTQDSLE NGQVNGDNQT
LGGVVAYTFD NGLYLAASYQ DKQYNFDNQV QHGDRSGSTL DTALAYPLSN EYKIKLGYFQ
FKDGIEDISS MDYDGFNTTL EWNPLANVRV HLEYLDKNYD NLNDDRAVTV GFRYDFNLNW
KG
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