| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0198 |
|---|
| Symbol | |
|---|
| ID | 4922604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 209239 |
|---|
| End bp | 210513 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640161721 |
|---|
| Product | competence/damage-inducible protein CinA |
|---|
| Protein accession | YP_001092329 |
|---|
| Protein GI | 127511132 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1058] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
[COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
|---|
| TIGRFAM ID | [TIGR00177] molybdenum cofactor synthesis domain
[TIGR00199] competence/damage-inducible protein CinA C-terminal domain
[TIGR00200] competence/damage-inducible protein CinA N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.045921 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATAG AAATGATCTG CACCGGTGAA GAGGTGTTAT CCGGACAGAT AGTCGATACC
AATGCGGCAT GGGCGGCAAA TGCCTTGATG GACCATGGCA TAGAGATGCA GCAGCGGATC
ACGGTAGGCG ATAGATTGGA CGATCTGGTC GAGGTGTTTC GTCAGCGTAG CGAGCACGCC
GATGTCATCC TGGTCAATGG CGGACTCGGC CCGACAAGCG ATGATATGTC TTCCGAGGCG
ATGGCCATTG CCAAGGGCGA GCCCCTGGTC GAGTGCACCC TGTGGCGGGA GCGTATTCAA
GAGTGGTTTA CCCGTAACGG TCGACACATG CCAGAAAGCA ATCTCAAACA GGCGATGTTA
CCCGCGTCGG CCATCATGGT GGACAATCCT GTGGGCACGG CCTGTGGCTT TCGTGTGAAG
CTCAATCGTG CCTGGCTCTT CTTTACTCCC GGTGTGCCTT TTGAGTTTAA GAAGATGGTG
ACCGAACAGT TCATTCCTTT TGTGGAGCAG ATCGCCGATA GCCATATCGA AGTCGAGGTG
CAGAAGCTAC TGACCATAGG TCAGGGGGAG TCGGCACTGG CCGATAAGCT AGAGGGCATG
CCTTTACCGG ATGGCATGAC CTTGGGCTAT CGCTCTTTCA TGCCCTATAT CGAGATCAAG
TTGTTTGCCC GGGGGGAAGC AGCTATCGGC GAATTAGACA GGGTGAAGGC TGAGGTGCTC
ACTCGTCTAG GCGATGCGGT CGTCGGCCAC AACGTTGCTT CACTGGCACA GGTGATCCAT
AACGGGCTGC TGGCTTCGGG TAAGCGTTTG AGTATTGCCG AGTCCTGTAC CGGCGGCATG
ATCGCTAACA ACCTGGTGGC CTTTGCCGGC AGCTCCAATT ACCTGGATCA GGGACTGGTG
ACCTATAGCA ACGAGTCTAA GGTACGCGTG TTAGGGGTTA AACCTGCGAC TCTGGATGAC
CATGGGGCGG TCTCTATCGC CACGGTTGAG GAGATGGCCA AGGGCGCCAG AGGCCTGCTG
GATAGCGACT ATGCGCTGGC GACCAGTGGC ATTGCCGGGC CCGATGGTGG CAGTGAGGCA
AAGCCGGTTG GCACTGTGGC GATCGCCCTG GCGACTCGGC AAGGTGTCTA TAGCCAGATG
CTTAAGTTCC CGGCGCGTTC CCGCGAGCTG GTGCGGCAGC TGAGCACGGC TGTTGCCTTG
GATATGCTAA GGCGTGAGCT GCAGGAGTCT CCCGTTCTGG TGGACTATTC CTCTTATCCG
CGATTCGCAA GATAG
|
|---|
| Protein sequence | MKIEMICTGE EVLSGQIVDT NAAWAANALM DHGIEMQQRI TVGDRLDDLV EVFRQRSEHA
DVILVNGGLG PTSDDMSSEA MAIAKGEPLV ECTLWRERIQ EWFTRNGRHM PESNLKQAML
PASAIMVDNP VGTACGFRVK LNRAWLFFTP GVPFEFKKMV TEQFIPFVEQ IADSHIEVEV
QKLLTIGQGE SALADKLEGM PLPDGMTLGY RSFMPYIEIK LFARGEAAIG ELDRVKAEVL
TRLGDAVVGH NVASLAQVIH NGLLASGKRL SIAESCTGGM IANNLVAFAG SSNYLDQGLV
TYSNESKVRV LGVKPATLDD HGAVSIATVE EMAKGARGLL DSDYALATSG IAGPDGGSEA
KPVGTVAIAL ATRQGVYSQM LKFPARSREL VRQLSTAVAL DMLRRELQES PVLVDYSSYP
RFAR
|
|---|
| |