Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0188 |
Symbol | |
ID | 4921839 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 194687 |
End bp | 195433 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640161707 |
Product | heme exporter protein CcmC |
Protein accession | YP_001092319 |
Protein GI | 127511122 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0755] ABC-type transport system involved in cytochrome c biogenesis, permease component |
TIGRFAM ID | [TIGR01191] heme exporter protein CcmC |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000216474 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00157389 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTGGAAAT GGCTACATTC TTACGCAGAC CCTCAAAAAG CCTATAACCT CTCTGGCAGG CTATTGCCTT GGTTTGCGAC GCTTGCAATC GCGTTTATTG GTGTGGGTTC TATCTGGGGT CTGTTGTTTG CGCCGGTAGA TTACCAGCAG GGTGACAGTT ACCGCATCAT CTTTATCCAC GTACCCGCGG CTTCTATGTC GATGTCGGCC TACATGGCGA TGGCAACCTC GGCCTTTATC GGCCTAGTAT GGCAGATTAA GTCTGCCGAC TGGGCGGCAG CGGCCATTGC GCCTATCGGT GCGGTCGTTA CCTTTATCGC CCTCATCACG GGTGCTGCCT GGGGCAAGCC TATGTGGGGC ACCTGGTGGG TGTGGGACGC TCGCCTGACA TCAGAACTTG TGTTGCTGTT CCTCTACCTG GGTGTGATCT CTCTGTACGC CTCTTTCGAA GATAAGGTAC TCGCCGCTCG TGCCGCCGGC ATTCTGGCCA TCGTGGGCGT GATCAACATT CCTATCATCA AGTACTCGGT AGAGTGGTGG AACTCACTAC ACCAGCCTGC GACCATCAAG ATCACCGAGA AGTCATCTAT GGCACCTGAG ATGTTATATC CACTGCTGAT CAACATCTTC GGTTTCGGCC TGATGATAGG CGCTATCACG CTTATTCGTT TCAGAGCCGA GATACTTGCC AGAAACGGTA TGCGTCCCTG GGTCAGGGAA CTCGCGCAAG CTGAAGGAGT CAAATAA
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Protein sequence | MWKWLHSYAD PQKAYNLSGR LLPWFATLAI AFIGVGSIWG LLFAPVDYQQ GDSYRIIFIH VPAASMSMSA YMAMATSAFI GLVWQIKSAD WAAAAIAPIG AVVTFIALIT GAAWGKPMWG TWWVWDARLT SELVLLFLYL GVISLYASFE DKVLAARAAG ILAIVGVINI PIIKYSVEWW NSLHQPATIK ITEKSSMAPE MLYPLLINIF GFGLMIGAIT LIRFRAEILA RNGMRPWVRE LAQAEGVK
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