| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0120 |
|---|
| Symbol | |
|---|
| ID | 4924027 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | - |
|---|
| Start bp | 131002 |
|---|
| End bp | 131757 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640161631 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092251 |
|---|
| Protein GI | 127511054 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3346] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGCTC CCACGGTTCG CGGTGGCACG ATTTTTCTCG TTTTAGTTAC TTTGCTGGTA
TTCACCATTC TGGTCAAGCT GGGACTTTGG CAGTTAGACA GGGCCGCCGA GAAGCAGGCA
CTGCAACAGG CGCTCACCGT CAAGCAGGCC GCCGCGCCGC TGGATTATCA GGGTCTGCTC
GCCTTGGCCG AAAGTGAATC CCTCACCGGC TATCGTCTGG AGGTCCAGGC GACTCCTGTG
GACGCCCCCA TCATATTGCT GGACAACCAG GTATATGAGG GCCACGTCGG TTATCTGGCC
TACCAGGTGA TGCGTGTCGA GACCGAGAGC GAGGCCGATG ATCCCTTGCT GCTGGTCGAG
CTCGGCTTTA TCGACAGCGG CCTGGACAGA CAGAAACTGC CCCAACTAAC CAAACTAAGC
CGAGAGGTGA CACTAAGTGG TCGCGTCTAT CAGCGAGCCA GCAACCCACT GAGTCAACAT
CTACTGGCCG AGACGGGCTC CCCCATGCGC ATCCAGAACC TTAACCTGCC GGAGTTATCG
CAAACACTTG GGCTGCCGCT CGCCCCCGCC ATTCTTCAAC CCGAGGCGAT TCCGGGCAGC
GCGCTCCCCC ATCCCTGGCA GCCGATCCCC ATGAGTGCCC TGAAGCATCA GGGCTACGCC
CTGCAGTGGT TCTCTATGGC GACCGCGTTT CTGATACTTA TGGCTTACCT TCTGATATTT
AAGAGGAAAA ACAAAGAATC CAGTAAAGAC AAATGA
|
|---|
| Protein sequence | MKAPTVRGGT IFLVLVTLLV FTILVKLGLW QLDRAAEKQA LQQALTVKQA AAPLDYQGLL
ALAESESLTG YRLEVQATPV DAPIILLDNQ VYEGHVGYLA YQVMRVETES EADDPLLLVE
LGFIDSGLDR QKLPQLTKLS REVTLSGRVY QRASNPLSQH LLAETGSPMR IQNLNLPELS
QTLGLPLAPA ILQPEAIPGS ALPHPWQPIP MSALKHQGYA LQWFSMATAF LILMAYLLIF
KRKNKESSKD K
|
|---|
| |