| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0101 |
|---|
| Symbol | |
|---|
| ID | 4920820 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 111320 |
|---|
| End bp | 111721 |
|---|
| Gene Length | 402 bp |
|---|
| Protein Length | 133 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640161612 |
|---|
| Product | endoribonuclease L-PSP |
|---|
| Protein accession | YP_001092232 |
|---|
| Protein GI | 127511035 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.000469691 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA TCTGGAGTCC GCATACCCTG GCGGCCCCTG CGGCCAACTA CCATCAATGT
GCGCTGGTTT CACAGCCCTC GCGCTGGCTG AATATTGCCG GGCAGCTGGG TATAGACCAG
CAGGGCACAC TTGCGCCTGA TACCGAGGGG CAGATAGTAC AGGCATGGGA GAACTTACGC
GCCGTGCTAC AGGCCAACGA CATGGACCTG CAAGACTTGG TATCGGTGCG CCTCTATCTG
GTTGACCGTG GCGATCTGCC TGCTTACCAA GCCGCCAAGG CGCGTTTAGG CTTCGATGTG
GGCGGACTGC CGACCACCTT GCTCTTCGTT CAGGGGCTGT TCGACCCGCT GTGGCGGGTA
GAGATAGAGG CGCAGGCGGC TAAGGTATTC GAGGGGGACT AG
|
|---|
| Protein sequence | MNKIWSPHTL AAPAANYHQC ALVSQPSRWL NIAGQLGIDQ QGTLAPDTEG QIVQAWENLR
AVLQANDMDL QDLVSVRLYL VDRGDLPAYQ AAKARLGFDV GGLPTTLLFV QGLFDPLWRV
EIEAQAAKVF EGD
|
|---|
| |