| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0049 |
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| Symbol | |
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| ID | 4923371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 59401 |
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| End bp | 60972 |
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| Gene Length | 1572 bp |
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| Protein Length | 523 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161561 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001092181 |
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| Protein GI | 127510984 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.335489 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAAAG GTATTGATAA ATACAGCATT GAAAGCACCG ACTATACGAT CGGCCAGGAC
AATGTGCAGA AGTGGGGGTT CGACGTACAC AACCCCGTAT TTGGGGTGAG TGCCGGGCTA
ATTGCCGCCT TCCTGCTGGC GACCCTGTTG ACCGATGCCG AGACGGCCAA GTCCGTGCTC
GATGGCATTA AGTGGAAGAT TATCGGCGCC TTCGATTGGC TGTTTATCTG GTCGGGGAAT
ATTTTCGTGA TCTTCTGCCT GGGCCTGATC CTCTCGCCCT ACGGCAAGAT ACGTCTCGGC
GGCAACGAAG CCACTGCGGA CTACTCCTTC CTCTCCTGGC TATCTATGTT ATTTGCCGCC
GGTATGGGGA TAGGCCTGAT GTTCTGGAGT GTGGCCGAGC CCGTGGCCTA CTTTACCGGT
TGGTATGAGA CGCCGCTCGG GGTCGAACCC AACACGCCGG AGGCGGCCAA GTTGGCGTTG
GGGGCCACCA TGTTCCATTG GGGTCTACAC CCCTGGGCCA TCTATGGTGT CGTGGCGCTG
TCGTTGGCCT TCTTCACTTA TAACAAGGGT ATGCCTCTCT CCATCCGCTC CATCTTCTAC
CCCCTGCTAG GTGACAGAGC CTGGGGCTGG GCGGGACATA TTGTCGATAT CCTTGCCGTG
CTGGCGACCC TGTTTGGTCT GGCAACCTCG CTAGGACTCG GCGCTCAGCA GGCGGCCAGC
GGTATCCACC ATGTGTTTGG TATAGAGGCC AGCCTGGGGC TGCAGATGAT AGTGATCGTC
GCCGTGACCC TGCTGGCAGT AGTGTCCGTG GTACGGGGTA TCGACGGCGG CGTTAAGGTG
ATCAGTAATA TCAATATGAT AGTCGCTTTC CTGCTGCTGA TCCTGGTGGC CATGATCGGC
TACGCCGTCA GCTTGGGCAG CATTCCTACC ACCCTGATGG CCTACGTGGA GAACATTATT
CCGCTTAGTA ATCCACACGG GCGCACCGAT GAGGCCTGGT TCCAGGGCTG GACAGTATTC
TACTGGGCCT GGTGGATCTC CTGGTCACCA TTCGTGGGCA TGTTTATCGC CAGGGTTTCT
AAGGGGCGTA CCGTGCGTGA GTTCATCACC GCAGTGCTGC TGGTACCTAC GGCTGTGACT
CTGATCTGGA TGTCGGTATT TGGTGGCATG GCGATCGATC AGGTAGTCAA CAAGGTGGGT
GAGCTGGGTG CCAAGGGGTT GACCGACGTG CCGCTGGCCA TGTTTGAGAT GTTCGATGTG
CTGCCGTTCG GCACACTGCT CTCAATCATC GCCGTGGTGC TGGTATTGGT GTTCTTCATC
ACCTCGTCGG ACTCGGGTTC ACTGGTGATC GACAGCATCA CCGCCGGCGG TAAGATAGAC
GCGCCTGTGC CACAGAGGGT GTTCTGGGCG CTGCTCGAGG GTGCAATTGC CATGGCCCTG
CTGTGGATCG GTGGTACAGA GGCGATTCAG GCCCTGCAGG CCGGCGCCAT CTCGACCGCG
CTGCCCTTTA CCGTGATACT TCTGCTGATG TGTGTCAGCC TGCTCAAGGG GATGCGCACC
GAGCGCTTCT AA
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| Protein sequence | MTKGIDKYSI ESTDYTIGQD NVQKWGFDVH NPVFGVSAGL IAAFLLATLL TDAETAKSVL
DGIKWKIIGA FDWLFIWSGN IFVIFCLGLI LSPYGKIRLG GNEATADYSF LSWLSMLFAA
GMGIGLMFWS VAEPVAYFTG WYETPLGVEP NTPEAAKLAL GATMFHWGLH PWAIYGVVAL
SLAFFTYNKG MPLSIRSIFY PLLGDRAWGW AGHIVDILAV LATLFGLATS LGLGAQQAAS
GIHHVFGIEA SLGLQMIVIV AVTLLAVVSV VRGIDGGVKV ISNINMIVAF LLLILVAMIG
YAVSLGSIPT TLMAYVENII PLSNPHGRTD EAWFQGWTVF YWAWWISWSP FVGMFIARVS
KGRTVREFIT AVLLVPTAVT LIWMSVFGGM AIDQVVNKVG ELGAKGLTDV PLAMFEMFDV
LPFGTLLSII AVVLVLVFFI TSSDSGSLVI DSITAGGKID APVPQRVFWA LLEGAIAMAL
LWIGGTEAIQ ALQAGAISTA LPFTVILLLM CVSLLKGMRT ERF
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