Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0002 |
Symbol | |
ID | 4921953 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | + |
Start bp | 1511 |
End bp | 2611 |
Gene Length | 1101 bp |
Protein Length | 366 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640161514 |
Product | DNA polymerase III, beta subunit |
Protein accession | YP_001092134 |
Protein GI | 127510937 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000158001 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000341195 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
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Sequence |
Gene sequence | ATGAAATTTT CAATTGATAG GGATGCCCTA TTAAAGCCGC TTCAACTCGT GAGTGGGGCG GTGGAGAGAC GACATAACTT ACCTATTCTG GCAAACCTTT TAGTTGAAGT AAGTGGTCAC TCACTTAAGT TGACCGGTAC CGATTTAGAG GTCGAATTAG TCGGCCAGGC AGAGCTGCAG GGTGAGGTTC AAGAGGGCCG CACCACAGTA CCGGCAAAGA AATTTCTCGA TATCGTTAAG TCCCTTCCCG ATCAAGTCGA ACTCAAAATA GAGCAGCAGG ATAACCGTCT GTTGCTGCGC TCGGGCCGCA GCCGCTTTAC CCTGGCGACC CTGCCGGCCG AAGAGTATCC CAATGTGGAT GCCTTCCAGG CCGATATCGA ATTTACCCTC AAGCAGGGCA CCCTGAAGTC GCTGATCGAT GCGACTCAGT TCTCCATGGC TAACCAGGAT GTGCGTTACT ACCTGAATGG TCTGTTGCTG GAAACCGAAG GCAATGTGCT GCGTGCCATC GCCACAGACG GTCATCGTCT GGCCTTGAGT CACCGCATGG TGCAAGACTC TCTGCCGGAG AAGCAGGTGA TCGTGCCGCG CAAAGGCGTA TTAGAGCTGC AGCGTCTGTT CGAAGGTGAA GATCTGGATG TGACCCTGTC TATCGGTGAA AACGCCATTC GTGCCACGAC TCAGAGCGCC GTGTTTACCA GTAAGCTGGT GGATGGTCGC TTCCCTGACT ATCGTCGTGT GTTGCCTAAG GGCGGTGACA AGATCGTTAT CGCCAGCCGT AACCATCTCA AGCAGGCGCT GCTGCGTGCC TCTATTCTCT CGAACGAGAA GTTCCGCGGT GTGCGCGTGC AGCTGGAGCA GAACCTGATT AAGATCACCG CCAACAACCC CGAGCAGGAA GAGGCGGAAG AGATCCTCGA TATCGAATAT GACAACGCAC CGCTAGAGAT CGGCTTCAAC GTCAGCTATC TCCTGGACGT GCTCAACAAC CTACCATCGG ATGACGTGCG CATCACGCTG ATCGATGGTA ACTCCAGCGC CCTGATCGAA AATCACGTCG AAGAAGATTC TATGTACGTC GTGATGCCGA TGCGTCTCTA G
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Protein sequence | MKFSIDRDAL LKPLQLVSGA VERRHNLPIL ANLLVEVSGH SLKLTGTDLE VELVGQAELQ GEVQEGRTTV PAKKFLDIVK SLPDQVELKI EQQDNRLLLR SGRSRFTLAT LPAEEYPNVD AFQADIEFTL KQGTLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS HRMVQDSLPE KQVIVPRKGV LELQRLFEGE DLDVTLSIGE NAIRATTQSA VFTSKLVDGR FPDYRRVLPK GGDKIVIASR NHLKQALLRA SILSNEKFRG VRVQLEQNLI KITANNPEQE EAEEILDIEY DNAPLEIGFN VSYLLDVLNN LPSDDVRITL IDGNSSALIE NHVEEDSMYV VMPMRL
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