| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_10301 |
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| Symbol | mfd |
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| ID | 4910960 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9301 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009091 |
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| Strand | + |
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| Start bp | 888711 |
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| End bp | 892220 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 28% |
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| IMG OID | 640160615 |
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| Product | transcriptional-repair coupling factor |
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| Protein accession | YP_001091254 |
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| Protein GI | 126696368 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTTAA ATACTTTAGT TGATTATATT TCTAACTCAC AAATTACTTC TGAATTAATA
AAAAGAATTT CAAAAAATAA TGAATTAAAT ATTATTGGTT CAAGTAGATA TGCTAAATCA
ATAATTTTAA ATAGCATCGC AAAAACAGAA GGGAAAAATA TATTATTAAT TTGTCCTAAT
GAAGAAATTG CCTACAAATG GATTGGTTAT TTTGAAAGTA TAAATAATAA AGCAGTTTTA
TATTATCCTC CAACAGAACA TCTACCATAC TCATCAATTA ATAAATCCAA AGAGATTGAA
TTTAGTCAGC TTACTGTTTT ATCTAAATTA ATAGAAAAAG AGAAAAATGA ACTTAATATT
GTTATATCAA CAGAAAGATC ACTACAACCT CATCTAGTAA ATAAAAACTT ATTAATTGAA
AACAAGTTAA ATTTGCAAAA AGGGGTTCAA ATCGAGATTA AAGAATTAGC AAATAAACTT
ACTTTGCTGG GTTATACAAA GGAAAATGTG ACATCATCAG AAGGATTTTG GAGTAGAAGA
GGGGAAATAA TAGATATTTA TCCTGTAAAT AATGAGTTTC CTGTAAGATT AGAATTTTTT
GATAATGTAA TTGAGAAAAT AAGAGAATAT GATCCCCACA CACAAAAAAC ATTAGAAAGT
ATCAATAATA TTGAAATAAT ACAAGCTGGA TTTGATTTGT TAATAAAAGA TAAGTTAAAT
AATTTATCTA AGAACAGTAT TTTTAATTCA GAAGATATAA ATAAAAATAA TCTTGATCGT
TATTTGGGAA TAATTGAAGA AGAACCTAGA AATATAATAG ATTTTATAAA TAAAGAAACA
ATTCTAGTAA TTGATGAATT AGAAGATTGT AAAAAATTTG CAAATAATTG GTATCTAGAT
TCAGAAAGTA ATTTTGATAA TTGTGTGTAC GAATTAAATG AGAACCTTAA AAATAATGAC
ATAAATTTAG AAGCCAAACC TAATTTGCAT TTAAAGTTTG AAGAAATATT AAATTCACTG
AGAAATTTTA ATTTAATAAA GTTTTATGAA TTTGAATCTA AAGTCAATAT TGATAATAGG
TTTTTGTTAA ATGATAAAAG ATTAAATTCA TACTCTAAAA ATATAGGAAA ATTATCCAAT
GATATAAATA AAAATATAAA AAATAATGAA AAAGTATGGA TATTATCAGC ACAGCCATTG
AGAACAAGGA CTTTACTTTT TGAGCACGAA TGTAATACAA ACTTCTTAAA CAATCCTAAT
GATATTGATG AAGCATTTAA GTCAATTAAT AATTCAACTC CTTTAATTTT AAAAAATAAG
AACAATTATG AAATCGAGGG TTTTTCTCTT CCGATATGGA AAGTTGTCCT GATAACAGAT
AAAGAATTAT TTTCACAACA ATCTCTTTTT AATAATGTAT TCATAAGAAG AAAAAAAAGA
AGTGTCAATT CAAATATAAA TGTCAATAAG ATTAGTCCCG GTGATTTTAT AGTCCATAAA
AATCATGGGA TAGGAAAATT TTTAAAAATT GAAAAAATAA ATTTAACTGG AGATTCAAGA
GATTATTTAG TCATTCAATA TCAAGATGGG AAGATAAGTG TTGCCGCTGA TCAACTCGGT
AGTGTTAACA GATATAGATC AAGCGGAAAA ATAAAGCCAA AAATAAATAA ATTAGGGGGG
ACAGAATGGG AAAGAATAAA AGATAAAAAT AAGAAACAAA TCAAGAAGGT TGCTGTCGAT
ATATTAAAAC TTTATGCAAA GAGAGAAAAA TTAAAGGGGC ACATATATCC AGAGGATGGT
CCTTGGCAAG ATGAATTAGA GGAATCATTC CCTTATCAAC CAACCCCAGA TCAAATTACT
GCTGTTAAGG AAATAAAATC TGATATGGAA AGCGATAAGC CAATGGACAG GTTAGTTTGT
GGAGATGTTG GATTTGGTAA AACAGAAGTC GCTGTTCGGG CTATTTTTAA GGCTATAACA
TCAGGCAAAC AGGTAATATT TCTAGCTCCT ACAACAATCC TAGCTCAACA ACATTGGAGA
ACCATAAATA ATAGATTTTC ACCTTACCCA ATTAAAGTAT CATTACTCAA TAGATTCAAA
TCCATTAATG AAAGAAGGGA AATCTATGCA GGTTTGAAAA ATAACAAAAT TGATTTAGTT
GTAGCAACAC ACCAAATTTT AGGAAAAGAA ATAGAAATTA AAAATTTAGG ATTACTTGTT
ATTGATGAAG AACAAAGATT TGGAGTAAGG CAAAAGGAGA AAATAAAAAA AATCAAAACC
AACATAGACG TTTTAACTCT CTCAGCAACT CCAATTCCAA GAACTCTTTA TATGAGCTTA
TCTGGACTAA GACAAATGAG CTTACTAAAT ACTCCTCCTC CATCAAGAAG ATCAATAAAA
ACATATTTAT CTGAAATAGA TATGGATGTT ATAAGAACTG CAATTAATAA AGAACTTGAT
AGGGGAGGTC AAATTTTTTA TGTTCTTCCA AGAATTTCTG ATATTGATCA AGCTATAGAC
AAATTAAAAA ATATGATTCC CAACTTAAAA TTTATTGTTG CTCATGGGCA AATGAACGAA
ACAGAGCTTG AAAATGCAAT GATTGCTTTT AATAATGGAG AAGTTGATCT AATGATATGT
ACAACGATAA TTGAAAGTGG ATTAGACATC CCTAAAGTAA ATACAATCAT TATTGAAGAT
TCTCACAAAT TTGGCCTTTC ACAACTTTAT CAACTTAGAG GAAGAGTTGG AAGAAGCGGT
GTACAAGCAC ATGCTTGGTT ATTCTATCCA AATATAAATA AAATTAATGA CGCTGCAAAA
CAAAGATTGA AAGCGATAAA AGACTTTTCA GAACTAGGAA GTGGATACCA ACTTGCTATG
AAAGATATGG AGATAAGAGG TGTTGGAAGT TTACTAGGAG AAGAACAAAG TGGAAAGGTT
AATGCGATTG GATATGATTT ATATATAGAG ATGCTCCATG AGGCTATTTC AGAAATCAGT
GGGCAAGAAA TACCTGAAGT TAACGACACG CAAATTGATC TACCTATAAA TGCATTTATA
CCAGCAACAT GGATATTAAA CAGGGAAGAG AAGCTTGAGG CTTACAAATC TGCTACTGAA
TGTTCAAATA ATTATGAATT AACTGAATTA GCTACAGACT GGGTGAATAG ATATGGAAAC
TTACCCAAAC CTGTTGAGTC CCTGATTATG ATAATGAGAC TAAAGTTACT AGCTAAAAAA
TGTGGTTTTA ATAAGATCAA GCTCAAAAAG CCAAACATCC TGATAGAGAC AAAATTAAAA
AATTCTACTT TTAAAATTCT TAAAAATTCT TTAGCAAGTA GTGTTCAAAA TAAATTTAAT
TTTAATGAAG GCGAACAATT ATCAATCATA ACTATAAGAG GTTTAGGTGC AACTGAAATT
CAAAATCAAA TTGATCAACT AATGTTGTGG TTCGGGTCTT TTGAAAAAGA AATAAATAAT
TTCGATAAAG AACTTATTAA AAGAGAATAA
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| Protein sequence | MSLNTLVDYI SNSQITSELI KRISKNNELN IIGSSRYAKS IILNSIAKTE GKNILLICPN
EEIAYKWIGY FESINNKAVL YYPPTEHLPY SSINKSKEIE FSQLTVLSKL IEKEKNELNI
VISTERSLQP HLVNKNLLIE NKLNLQKGVQ IEIKELANKL TLLGYTKENV TSSEGFWSRR
GEIIDIYPVN NEFPVRLEFF DNVIEKIREY DPHTQKTLES INNIEIIQAG FDLLIKDKLN
NLSKNSIFNS EDINKNNLDR YLGIIEEEPR NIIDFINKET ILVIDELEDC KKFANNWYLD
SESNFDNCVY ELNENLKNND INLEAKPNLH LKFEEILNSL RNFNLIKFYE FESKVNIDNR
FLLNDKRLNS YSKNIGKLSN DINKNIKNNE KVWILSAQPL RTRTLLFEHE CNTNFLNNPN
DIDEAFKSIN NSTPLILKNK NNYEIEGFSL PIWKVVLITD KELFSQQSLF NNVFIRRKKR
SVNSNINVNK ISPGDFIVHK NHGIGKFLKI EKINLTGDSR DYLVIQYQDG KISVAADQLG
SVNRYRSSGK IKPKINKLGG TEWERIKDKN KKQIKKVAVD ILKLYAKREK LKGHIYPEDG
PWQDELEESF PYQPTPDQIT AVKEIKSDME SDKPMDRLVC GDVGFGKTEV AVRAIFKAIT
SGKQVIFLAP TTILAQQHWR TINNRFSPYP IKVSLLNRFK SINERREIYA GLKNNKIDLV
VATHQILGKE IEIKNLGLLV IDEEQRFGVR QKEKIKKIKT NIDVLTLSAT PIPRTLYMSL
SGLRQMSLLN TPPPSRRSIK TYLSEIDMDV IRTAINKELD RGGQIFYVLP RISDIDQAID
KLKNMIPNLK FIVAHGQMNE TELENAMIAF NNGEVDLMIC TTIIESGLDI PKVNTIIIED
SHKFGLSQLY QLRGRVGRSG VQAHAWLFYP NINKINDAAK QRLKAIKDFS ELGSGYQLAM
KDMEIRGVGS LLGEEQSGKV NAIGYDLYIE MLHEAISEIS GQEIPEVNDT QIDLPINAFI
PATWILNREE KLEAYKSATE CSNNYELTEL ATDWVNRYGN LPKPVESLIM IMRLKLLAKK
CGFNKIKLKK PNILIETKLK NSTFKILKNS LASSVQNKFN FNEGEQLSII TIRGLGATEI
QNQIDQLMLW FGSFEKEINN FDKELIKRE
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