| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_A2000 |
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| Symbol | yscR |
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| ID | 4888844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 668 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009075 |
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| Strand | + |
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| Start bp | 1937623 |
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| End bp | 1938273 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640131938 |
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| Product | type III secretion system protein |
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| Protein accession | YP_001062995 |
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| Protein GI | 126444935 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.928178 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGTACAGT TCAGTGACAT CACCGGGCTG CTGCTCGTTG TCATCGCAAT CAGCTTGTTG
CCGTTCATTG CGATGGTCGT GACGTCGTAT GCGAAGATCG TCGTCGTGCT GGGGCTTCTG
CGCAACGCGC TCGGCGTGCA ACAGGTTCCG CCCAATATGG TTCTCAACGG GATCGCGATT
CTGGTATCGC TCTACGTGAT GGCACCTATC GGCATGCAGG CGGCGAAGGC GCTCGACGAA
CAACAGCTCG CCTCGCAGTC CTCCCAGGCC ATCATCCAAG CGCTCGGTTC AGCACGCGAA
CCGTTCCGAT CGTTTCTCGA GAAACACACT CCCGAGCGCG AAAAACGCTT CTTTATTCGT
TCCGCTTCCG TCATCTGGCC GAAGGAAGAA GCATCGCTTC TGAACGAGCG CGACCTCATC
GTTCTCGCAC CGGCGTTCGC GCTATCGGAG TTGACCGACG CGTTCAAGAT CGGCTTTCTG
CTGTACATCG TGTTCATCAT CGTCGATCTG GTGATCGCCA ATGTGCTCCT GGCGCTGGGG
CTCAACCAGA TCACGCCGAC CAACGTCGCC ATACCATTCA AGCTGCTGCT GTTCGTTGCC
ATGGACGGTT GGTCCACGCT CATCCACGGC TTGGTCATGA CTTACAAATG A
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| Protein sequence | MVQFSDITGL LLVVIAISLL PFIAMVVTSY AKIVVVLGLL RNALGVQQVP PNMVLNGIAI
LVSLYVMAPI GMQAAKALDE QQLASQSSQA IIQALGSARE PFRSFLEKHT PEREKRFFIR
SASVIWPKEE ASLLNERDLI VLAPAFALSE LTDAFKIGFL LYIVFIIVDL VIANVLLALG
LNQITPTNVA IPFKLLLFVA MDGWSTLIHG LVMTYK
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