| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1949 |
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| Symbol | |
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| ID | 4909711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1813182 |
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| End bp | 1814864 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125700 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_001056831 |
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| Protein GI | 126460553 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACTA CAACAAAGTT TGTATTCGAG GACAGATTCG CCAAGGTGGC GATAACGTTT
AGCTACATAA TGCTTCTGCT GGGCGGCCTC TTTGGATTTC TGCAAGTGTT GTCCAGGGCC
CCCGGCATGC CGCAGTTGGA GACGCCCGAG CTCTACTACA GCGGGCTGAC GCTACACGGC
ACTGCCTTGG CGATATTGTG GACGGCGTTC TTCATAATGG GCCTTGCCGT GTTCGTGGTG
ACGCGGGAGC TCGACATGAG GCTGAACCCG GTGCTCCTCC GCTCTGCCTG CGTCTTGGCC
GTTCTCGGCA CTCTAATGGC GGCTGTGGAG ATTCTCAGAG GAGAGGCCGC AGTGCTCTAC
ACCTTCTACC CGCCGCTGTA CGCCTCGCCC CTCTTCTTCA TAGGCCTAGC CGTCTTGCTT
ATAGGCACTT GGCTGTTCGG CGCCGCCATC TTGCACGCCA TTTTCAAATG GAAGGCCGCT
AATAGAGACA AGGAGGTGCC TCTGGGCGTC TACGGCGTGT TCACCACCGT GATGATATGG
CTCTACGCCA CTCCGCCGCT GGCATACGCC GTGTTGTTCA GGTCTCTCCC CATGGCCCTC
TTCGGCTCCA ACGCCCCAGT AGACGTCTTG GAGTGGAGGC TGTGGTTCTG GTACTTTGGC
CACCCGCTGG TCTACTTCTG GCTAGTGCCC GCGGTGACTG TATGGTACAC CATCTTGCCC
AGAGTGCTCG GCGTGGAGGT GTTCAGCAAG ACCATGGCCA AGGCCGCCTT CTTCCTCTAC
CTAATAGCCT CCACCCCGGT GGGCCTGCAC CACCAGTTCG TAGACCCGGG CGTCCACCCG
GTGTACAAGT ATTTGCACAC GGTGCTCACG TACGTGGTGG CTGTGCCCAG CTTCCTCACG
GCCTTTAACA TAGTAGCCAC TCTGGAGAGG GCGGGCAGGG CCAGGGGTGG GAAGGGCCTC
TTCGGCTGGA TAACCGCGTT GCCCTGGGGC AAAGACCCTG TCTTCACCGG CATAACCTTT
GCCATAATCC TCTTTGGAAT TGCTGGCTTC TCCGGCGTGG TTAACGCCTC CTTTAACGTG
AACTATATGG TGCACAACAC CGCCTGGATA GTGGGCCACT TCCACTTGAC GGTGGGCGGC
GGCGTGACGC TGACATTCAT CTCCACCTCC TTCCTGCTGG TGCCGCTCTT GTTTGGCAGA
GACTACGTGG CCAAGAGGCT CTTGATCGCG GTGCCCACGC TGTGGTTCAT AGGCCAGCTC
ATCTTCGGCT TCGCCTACCA CCTGGCGGGA ATATATGGAG CGCCGCGGAG GACCTATCTG
CCGCCCTATC TGCAGAACCC CGACTTGACG CAAGGCGCCC ATTTCGTGCC CGACTGGATT
CCGCTCCTCC AGCTCGGCGC AGTGGGCGGC GTCACCTTCG CGCTGGGAGG CGCCCTGTTC
CTACTGCTGA CCTTTGCCAC AATATTTGCA GGCCCCAGGG TGAGACTGAG CGGCGGCGAG
GTGAAGATAT CCCCAGACCC CGACCGCGCC ACATTCTTCG ACAAGCTGGG CCTCGTAATA
TTGATAGGCC TAGTGCTGAT CGTAATCGCC TACTCGCTGC CAGCGATAGA GGTGTACTCC
AGAGGCTTGA GCCCAGCCCC GCCCTACAAC CCGCTCACAG GCGCCCCTGT GACGACTAGC
TAA
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| Protein sequence | MATTTKFVFE DRFAKVAITF SYIMLLLGGL FGFLQVLSRA PGMPQLETPE LYYSGLTLHG
TALAILWTAF FIMGLAVFVV TRELDMRLNP VLLRSACVLA VLGTLMAAVE ILRGEAAVLY
TFYPPLYASP LFFIGLAVLL IGTWLFGAAI LHAIFKWKAA NRDKEVPLGV YGVFTTVMIW
LYATPPLAYA VLFRSLPMAL FGSNAPVDVL EWRLWFWYFG HPLVYFWLVP AVTVWYTILP
RVLGVEVFSK TMAKAAFFLY LIASTPVGLH HQFVDPGVHP VYKYLHTVLT YVVAVPSFLT
AFNIVATLER AGRARGGKGL FGWITALPWG KDPVFTGITF AIILFGIAGF SGVVNASFNV
NYMVHNTAWI VGHFHLTVGG GVTLTFISTS FLLVPLLFGR DYVAKRLLIA VPTLWFIGQL
IFGFAYHLAG IYGAPRRTYL PPYLQNPDLT QGAHFVPDWI PLLQLGAVGG VTFALGGALF
LLLTFATIFA GPRVRLSGGE VKISPDPDRA TFFDKLGLVI LIGLVLIVIA YSLPAIEVYS
RGLSPAPPYN PLTGAPVTTS
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