| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1782 |
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| Symbol | |
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| ID | 4908172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1652801 |
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| End bp | 1654036 |
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| Gene Length | 1236 bp |
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| Protein Length | 411 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125531 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_001056665 |
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| Protein GI | 126460387 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000171757 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGAGGCCC CGCCATTTGA CAAAAGCTTG GGGATGCAAT ACTACGCCAC GGACACTTGC
CCGGCCGGGG GCCGTATCAA GGAAAGGGTG GAGGATTTCG TCGTGGAGGA GATCCTCAAA
GACGGCACTG TTGTCTCTGT CAACGGCGTT GCGCTCACGC CGAGGGTTGG GAATTGGACG
TGGATTCACG TCGTGAAGAG GGGCGTGGAC ACTCTTAAGT TTGTGTTAAG GTTGGCCAAG
GCTCTTGGGG TAAATCCACG CGACATATCT ATCGGCGGCA TAAAGGACAC TAGGGCGGTC
ACTTCGCAGA TAGTGTCTGT GAGGGGAACC GTCTCCAGCC TGCCCCAGAT CCCCGGGGTA
GAGTTCTTAG GCATGTGGCC GATGGATAGG CCTATTACGC CGGCGGAGAT ATATGGGAAT
AGATTTACGA TTGTTGTCAG AGGCGTGGAT AGGGCGGACT GCGCCGCTGA GGCGCTTGCC
GCTTTGGCCA AGACGCCGAT TCCCAACTAC TACGGCTATC AGCGCTTCGG GACTGTGCGC
CCCGTGGGCC ACCTCCTCGG CCTAGCCCTC TTGAAGAAGG ACGCCGAGGC GTTCTTCGAC
GTCATGTTTT GTAAAATATT TCCGCGGGAG TCCGAGGCCG CCAAGAGAGC GAGGGAGTTG
GCGTGTAGGG GGGAGTACGC CAAGGCGCTG GAGGCTTTTC CCAAGAGGTT TCTCGAGGAG
AGGGCTTTTC TGAGGAAGCT GGTGGAGGGG GCGGACCTCT GGAACGCGGC GATGGCTATA
CCGGGGCAGA TCCTCAAGAT CTACATAGAG GCTGCCCAGT CCTACGTCTT TAACCTCTTT
CTCTCGAGGC GGATGGAGCT GGCGCCGCTG GAGCCCGTGG AGGGGGACTT AGTGGACGTG
GGGGGCCAAG TGGCGTACTA CGTGGAGGGC CTCGCGGGGG ATCTCGTCTT GCCCGTGCCC
GGCGCGGGGG TTAAGATGCC GAGGGGCAGA GTGGGCGAGG CTCTTGTAAG AGTGGTGAAG
GACCTAGGCC TCGACCCAGC CCTCTTCTTG AAGATGCCGA GGGGCTTGAG GGCGTATGGT
AGCTATAGGC GCGCCCGGCT GGACGTAGGC CAGCTGGAGT ACAAGGTCGC CGGCGGCGAG
GTGGAGATAC GTATGACTCT GCCGAGGGGG AGCTACGCCA CTGTGGTATT GAGGGAGGTG
GTGAAGCCGG TCGACCCCGC CGCGCATGGG TTCTAA
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| Protein sequence | MEAPPFDKSL GMQYYATDTC PAGGRIKERV EDFVVEEILK DGTVVSVNGV ALTPRVGNWT
WIHVVKRGVD TLKFVLRLAK ALGVNPRDIS IGGIKDTRAV TSQIVSVRGT VSSLPQIPGV
EFLGMWPMDR PITPAEIYGN RFTIVVRGVD RADCAAEALA ALAKTPIPNY YGYQRFGTVR
PVGHLLGLAL LKKDAEAFFD VMFCKIFPRE SEAAKRAREL ACRGEYAKAL EAFPKRFLEE
RAFLRKLVEG ADLWNAAMAI PGQILKIYIE AAQSYVFNLF LSRRMELAPL EPVEGDLVDV
GGQVAYYVEG LAGDLVLPVP GAGVKMPRGR VGEALVRVVK DLGLDPALFL KMPRGLRAYG
SYRRARLDVG QLEYKVAGGE VEIRMTLPRG SYATVVLREV VKPVDPAAHG F
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