Gene Pcal_1756 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1756 
Symbol 
ID4909671 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1632112 
End bp1633023 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content52% 
IMG OID640125503 
Productbranched-chain amino acid aminotransferase 
Protein accessionYP_001056639 
Protein GI126460361 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 
TIGRFAM ID[TIGR01121] D-amino acid aminotransferase
[TIGR01122] branched-chain amino acid aminotransferase, group I 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.000715407 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAGATAT ACGCCCAATA CGTCTGGCTA GACGGCCGCA TTACGAAATG GGAAGAGGCA 
AAAGTCCACG TTTTAACCCA CGCGCTACAC TACGGCACGT CCATCTTCGA AGGCATTAGG 
GCGTATTGGA ACGGCGAAAA CCTCTACGTG TTTAGACTCG ACGACCACGT GGCGAGGATG 
TTCTACTCGG CGAAAATCCT TGGGATAAAG ATGCCATACA GCCAGGGCGA GGTACGAAAC 
GCCGTGCTGG AGGTGTTACG TGCAAATAGC TTTAAGGAGG ACGTATACAT TAGGCCGGTA 
GCGTACGTCT CTACGCCGAC CGTCACCCTG GATGTCAGAA GCCTAGATGT TTCAGTCGCC 
GTTGTGGCGT TCCCGTTTGG AAAATACCTA CCTCCCGACG GAATTAGGGC CGCCATTGTC 
ACATGGCGAA GAGTACATAA TACCATGTTG CCAGTCATGG CAAAGATAGG CGGGATATAC 
GTAAACTCTG TGCTAGCTCT AGTAGAGGCT AGAAGCCGCG GATACGACGA AGCGTTGCTT 
TTAGACGCCA ATGGCTACGT GGTAGAGGGG TCTGGGGAAA ACGTGTTCGT GGTGAGAAGG 
GGAAAGATGT ATACGCCACC TGTTCACTCC TCAATACTCG AGGGCATAAC CAGGGACGCC 
ATTATTACGC TTGCAGACGA TCTAAAAATC CCCGTGGCGG AAAAGCCCGT GACTAGAGAG 
GAGGTGTACA CTGCCGACGA AGTATTCTTG GTGGGGACTG CGGCAGAGGT TACGCCAGTA 
GTCGAGGTAG ACGGCAGAGC CATAGGCGAC GGAAGGCCAG GCCCTATAAC CACTAGGCTT 
AGAGAGCTGT ACGCAAGAGT TGTAAGAGGT GGGGTTGAAA AATACCTACA CTGGCTTACT 
CCCACCTATT AG
 
Protein sequence
MKIYAQYVWL DGRITKWEEA KVHVLTHALH YGTSIFEGIR AYWNGENLYV FRLDDHVARM 
FYSAKILGIK MPYSQGEVRN AVLEVLRANS FKEDVYIRPV AYVSTPTVTL DVRSLDVSVA 
VVAFPFGKYL PPDGIRAAIV TWRRVHNTML PVMAKIGGIY VNSVLALVEA RSRGYDEALL 
LDANGYVVEG SGENVFVVRR GKMYTPPVHS SILEGITRDA IITLADDLKI PVAEKPVTRE 
EVYTADEVFL VGTAAEVTPV VEVDGRAIGD GRPGPITTRL RELYARVVRG GVEKYLHWLT 
PTY