Gene Pcal_1706 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1706 
Symbol 
ID4908132 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1588520 
End bp1589662 
Gene Length1143 bp 
Protein Length380 aa 
Translation table11 
GC content54% 
IMG OID640125453 
Productradical SAM domain-containing protein 
Protein accessionYP_001056589 
Protein GI126460311 
COG category[R] General function prediction only 
COG ID[COG0535] Predicted Fe-S oxidoreductases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0248528 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTCCGA TAAGCGTCAT GGTGGCCGGC GTGGGTACCA CTTCGTTTAA AGTTAAGGGT 
AGGTTCGGTG TGGAAAAGCC AAGCGACTTC TCGGCGCCGC TAAGGCCGAT TGTGAGTTGG
AATATCACAA AGAGGTGCAA CTTGCGCTGT CTCCACTGCT ACATCGATGC AGGCGAGGCC
GAGGCTAACG AACTAACTAC AAAGGAGGCC TTAGATGTCG TTGACCAAAT GGCAGAAGTG
GGCGTGCCGC TCATATTGTT CACAGGCGGC GAGCCGCTTG TTAGACGCGA CTTTTTTGAG
ATTGCCCAGT ATGCCAGAGA TAGGGGCATT AAGCTAGTGT TATCCACAAA TGGCACTTTG
ATAACGCCGG AGGTTGCGAA GAGGCTGAAA GAAGTGGGCG TCGTCTATGT CGGCGTCAGT
CTCGACTCTA TAAGCGCAGA GTTCCACGAC AGATTTAGGG GCGTGCAGGG GAGCTTTGCC
GCAGCGTTGG CTGGGATCAA GAACGCAATT GAGGCAGGTC TCGACGTGGG CCTCCGCTTT
GTCGTCACTG CGAAGAATAT ACACGAGGTA GGGGAATACG TCGACTTTGC CGCGTCTCTT
GGCGTGAGGA GGATCACCTT TTACCACCTC TCCGCGGCTG GCAGGGCGCA GAAGCTCTCT
GAGGACTGGT GGTACACGCC GGAGCAGTAT AGACGGTTTA TTGAGACGTT GATAGCCAAG
GCCAGGCAGT ACGCGGGCAA GCTGGAGATA GAAACTACTC TGGCACCCTA CGACGGCATC
TATATAGCTT TGACGGTTGG CCACGGCGAT ACAAAGTATC TAGAATTTGT GGAGGCGACG
GGGGGTTGCG GCAGGAAAAT CGTGTCTATA TACCCAAACG GCGATGTATA CCCTTGCCAG
TTCATAGACT TCTACAAGTT GGGCAACGTC AGAGAGAAGA GGCTGAGGGA CATACTGCGC
CCCGAGGTGT TGGAGCCCTT TGTAAACACT GACCGCTATC TGCGGGGGCC CAAGTGCTCG
CCCTGCCGCT TTAAGAGATA TTGCAAGGGC GGGGACAGGA CTAGGGCTTA CTACTTAACT
GGCGACATCT TCGGCGACGA CCCCCTGTGC CCCATTCCAC GCCTCTTTGG CAATGAAGAT
TAG
 
Protein sequence
MIPISVMVAG VGTTSFKVKG RFGVEKPSDF SAPLRPIVSW NITKRCNLRC LHCYIDAGEA 
EANELTTKEA LDVVDQMAEV GVPLILFTGG EPLVRRDFFE IAQYARDRGI KLVLSTNGTL
ITPEVAKRLK EVGVVYVGVS LDSISAEFHD RFRGVQGSFA AALAGIKNAI EAGLDVGLRF
VVTAKNIHEV GEYVDFAASL GVRRITFYHL SAAGRAQKLS EDWWYTPEQY RRFIETLIAK
ARQYAGKLEI ETTLAPYDGI YIALTVGHGD TKYLEFVEAT GGCGRKIVSI YPNGDVYPCQ
FIDFYKLGNV REKRLRDILR PEVLEPFVNT DRYLRGPKCS PCRFKRYCKG GDRTRAYYLT
GDIFGDDPLC PIPRLFGNED