Gene Pcal_1630 details

Gene Information

• Locus tag: Pcal_1630
• ID: 4908803
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1518664
• End bp: 1519218
• Gene Length: 555 bp
• Protein Length: 184 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640125377
• Product: tRNA-splicing endonuclease subunit alpha
• Protein accession: YP_001056513
• Protein GI: 126460235
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1676] tRNA splicing endonuclease
• TIGRFAM ID: [TIGR00324] tRNA intron endonuclease

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 35
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGATCAAAG GCGTCTTGAG GGGCCTTGCG GTAGTTGTAG AAGACGTAGA AAGCGGCAGG 
GAGCTGTATA GGCGGGGCTT CTACGGGCGG TTTCTAGGCT ATGACAAGGT GAAGAGGGAG 
GAGGTGGATA AGGTAGATGC CCCGCTGATA CTAGCCCTCT ACGAGGCGTT GTACCTCGCG 
GAGAAGGGGG TGTTGACGGT GGTGGATGAG AACGGAGTGG AAATACCGCC TCAACAGTTG 
GTGGAGCTGG GTAGGGCTAG GATTAAGAAC TTCGACGATA TATACAAGAT ATACAAGTAC 
TTTAGAGACT TGGGCTACGT GGTTAAGAGC GGGCTTAAGT TCGGCGCCTT GTTCTCAGTG 
TACGAGAAGG GGCCGGGCAT AGACCACGCG CCTATGGTGG TAGTGTTTTT GGAGCCTGAC 
AAGGGCATCT CGGCTACGGA CATTACGAGG GGTGGGAGGC TGGGGCACAG CGTTAAAAAG 
ACCTTTACCT TGGCCACTGT GCTGAAGCCG GCGGGGGAGG TGGCTCTGCT CGGCTTTACC 
TGGGCGCGCC TCTAG 

 

Protein sequence

MIKGVLRGLA VVVEDVESGR ELYRRGFYGR FLGYDKVKRE EVDKVDAPLI LALYEALYLA 
EKGVLTVVDE NGVEIPPQQL VELGRARIKN FDDIYKIYKY FRDLGYVVKS GLKFGALFSV 
YEKGPGIDHA PMVVVFLEPD KGISATDITR GGRLGHSVKK TFTLATVLKP AGEVALLGFT 
WARL