Gene Pcal_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1605 
Symbol 
ID4910148 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1493125 
End bp1494102 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content59% 
IMG OID640125352 
Product3-isopropylmalate dehydrogenase 
Protein accessionYP_001056488 
Protein GI126460210 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0473] Isocitrate/isopropylmalate dehydrogenase 
TIGRFAM ID[TIGR02088] isopropylmalate/isohomocitrate dehydrogenases 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGTATA AGGTGTTGGT CATACCGGGG GACGGCATAG GCCCGGAGGT GGTGGAGGCG 
GCCATGTACG TGGTAAACGC CGCCGCGGCC AAGTTCGGCG TGGAGCTTGA GGTGAAGACC 
GCGGAGGCTG GGGACGCGGC TTTGCGTAAA TACGGCGTGG CCATGCCGCC GGAGACTTTG 
AAGCTGGCCG ACGCCGCCGA CGTAATTTTC AAGGGCCCCA TTGGGGAGTC TGCGTACGAC 
GTGACGTCGC TTATTAGGAT GAGGTACACC CTCTACGCCA ATATTAGGCC TGTGAAAGAT 
CTGCCCGGCG TGCCCGCCGT TAAGCCCATA GACTGCGTCT TTGTGCGAGA GAACGTGGAA 
GACGTATATG TGGGGGCCGA GTACAAGGTG GGAGACGTGG CCATCGCACT GAAGGTCATC 
ACGGGGCAGG GGACGAGGCG CGTGGCGAGG GTGGCTAGGC GCTACGCCGA GGCTAGGAAG 
AGGAGGGTAA CGATTGTCCA CAAGGCCAAT GTGTTGAGGG TGGTGGATGG CTTCTTCAGA 
GATGTGGCCC TCGAGGAGCT CAGGGGGCTG GAGGTGGACC AGATGTACGT CGACGCCGCG 
GCGATGGAGC TCGTGAGAAA CCCCTCCCGC TTCGACGTAG TCCTCACCAC TAATCAATAC 
GGCGACATTT TGACAGACTT GGCGGCGCAG GTGGCCGGCG GCATTGGCCT AGCCCCCAGC 
GGCAACATAG GCGACAACAA GGCCATGTTT GAGCCTGTAC ACGGCGCTGC TTTCGACATC 
GCGGGGAAGG GCGTGGCGAA CCCCATAGCC ACTATACTGT CGGCGGCCAT GATGTTCGAG 
TGGCTGGGCA GAAGAGACGC CGCCGAGGCA ATTAGAGCCG CCGTAGAAAA ATCTATAGAG 
GCCGGCTATA AAACTCCAGA CATAGGCGGC AAGTATAGTA CAAAAGAAGT GGGAAAGTAT 
ATAGCTTCAA TCCTTTGA
 
Protein sequence
MPYKVLVIPG DGIGPEVVEA AMYVVNAAAA KFGVELEVKT AEAGDAALRK YGVAMPPETL 
KLADAADVIF KGPIGESAYD VTSLIRMRYT LYANIRPVKD LPGVPAVKPI DCVFVRENVE 
DVYVGAEYKV GDVAIALKVI TGQGTRRVAR VARRYAEARK RRVTIVHKAN VLRVVDGFFR 
DVALEELRGL EVDQMYVDAA AMELVRNPSR FDVVLTTNQY GDILTDLAAQ VAGGIGLAPS 
GNIGDNKAMF EPVHGAAFDI AGKGVANPIA TILSAAMMFE WLGRRDAAEA IRAAVEKSIE 
AGYKTPDIGG KYSTKEVGKY IASIL