Gene Pcal_1604 details

Gene Information

• Locus tag: Pcal_1604
• Symbol: aksA
• ID: 4910088
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 1491999
• End bp: 1493135
• Gene Length: 1137 bp
• Protein Length: 378 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640125351
• Product: trans-homoaconitate synthase
• Protein accession: YP_001056487
• Protein GI: 126460209
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0119] Isopropylmalate/homocitrate/citramalate synthases
• TIGRFAM ID: [TIGR02090] isopropylmalate/citramalate/homocitrate synthases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 37
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGTGAAAA TCTTCGACAC CACTCTTAGA GATGGCGAGC AGATGCCTGG GGTCGCCCTG 
ACGCCCGAGG AAAAGTTGCA AATTGCCCTG GCCCTCGACG AGGCGGGGGT AGACATGATT 
GAGGCCGGCT TCGCCGCTGT GTCGAAGGAG GAGGCGGCGG CCGTTAGGCA GATCGCCAGG 
GAGGTGTCTA GGGCGGAGGT GGTGAGCCTC GCGCGTATGA CTAAGTCTGA CGTAGATGCG 
GCTGTGGCCG CCGACGTGGA TGTGGTGCAC GTGTTTATAG CCACGTCCGA CGTCCACATG 
AAGTACAAGT TGGGCATGAC AAGGGAGCAG GTTATAAGGG CTGTGGAGGA GGTGATCCCC 
TACGCCAAGT CCCACGGGGT GAGAGTTCTC TTCAGCGCGG AGGACGCCAC TAGGAGCGAC 
TTGGACTTCT TAGTCGAGGT GTATAAGACG GCCATTGAGG CTGGGGCTGA CGAGATAAAC 
GTCCCCGACA CGGTGGGGGT CATGACGCCG AGCAGAATTG CGTTTCTGGT GAAGTTCCTA 
AGGGAGAGGT TGCCCCCGGT CCCCATGCAC GTGCACTGCC ACGACGACTT CGGCATGGCC 
GTGGCCAACA CTATAACGGC CATCGAGGCG GGCGCTGACG TGGCGCAGGT GGTGGTGAAC 
AACTTTGGGG AGAGGGCGGG CAACGCGGCT TTGGAGGAGG TGGTTGCGGC TCTGCACTTC 
TTGCTGGGTT ATAAGACCAA TGTTAGACTT GAGATGTTGT ATGAGTTGTC TAGGCTTGTG 
TCAAGGCTGT TCGGCGTGCC TGTGCCTCCC AACAAGGCGG TGGTGGGGGA CAACGCCTTT 
AGCCACGAGG CCGGGATCCA TGTCCACGGG GTTTTGAACA ACCCGTTCAC ATACGAGCCA 
ATGACGCCGG AGGCGGTCGG CAATAGGAGG AGGATTGTCT TGGGGAAGCA CTCGGGGAGG 
CATGCCGTTG TGTGGGCGTT GAAGAACATA GGCGTAGAGC CTCACGACGA GTTGGTGAAC 
TACGTCTTGG AGCAGGTGAA GGAGCTCGCC GTTAGAAAGG TGAGGATAGA CGAGGAGGTA 
TTGAGGGAGG TTGTTCATGC TTATATGCGG GCTTCTTCTC GCCCATATGC CGTATAA 

 

Protein sequence

MVKIFDTTLR DGEQMPGVAL TPEEKLQIAL ALDEAGVDMI EAGFAAVSKE EAAAVRQIAR 
EVSRAEVVSL ARMTKSDVDA AVAADVDVVH VFIATSDVHM KYKLGMTREQ VIRAVEEVIP 
YAKSHGVRVL FSAEDATRSD LDFLVEVYKT AIEAGADEIN VPDTVGVMTP SRIAFLVKFL 
RERLPPVPMH VHCHDDFGMA VANTITAIEA GADVAQVVVN NFGERAGNAA LEEVVAALHF 
LLGYKTNVRL EMLYELSRLV SRLFGVPVPP NKAVVGDNAF SHEAGIHVHG VLNNPFTYEP 
MTPEAVGNRR RIVLGKHSGR HAVVWALKNI GVEPHDELVN YVLEQVKELA VRKVRIDEEV 
LREVVHAYMR ASSRPYAV