Gene Pcal_1538 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1538 
Symbol 
ID4909156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp1434758 
End bp1435366 
Gene Length609 bp 
Protein Length202 aa 
Translation table11 
GC content60% 
IMG OID640125287 
Productprotein of unknown function DUF71, ATP-binding region 
Protein accessionYP_001056423 
Protein GI126460145 
COG category[R] General function prediction only 
COG ID[COG2102] Predicted ATPases of PP-loop superfamily 
TIGRFAM ID[TIGR00290] MJ0570-related uncharacterized domain 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0513881 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATAG CCTTCTACAG CGGGGGCAAA GAGAGCGTGT ACGCGGCTCT CTTGGAGTGG 
CCCATAGACG CCTTTGTATT CCTCATCTAC GAGTTTCCCA GGCCCTCTCC CCACATCGCT 
AACTTGGGCT TCGCCGTGGG GTTTGGCTCG CGTATAGCCC CCGTGGTGGT TCACAAGTTG 
CCCAAGGGGA GAGAGTTTGA GGAAAAGGCC CGCCTCTTGA GGAAGCTGGG CGTAGACGTG 
ATTGTCGCTG GGGACGTCGA CGTGGAAGAC CACTTGCGCT ACATGGAGAA GCTGGCGCGC 
GAAGTGGGGG CGTCGCTGAA GGAGCCGCTG TGGGGGATGG ACCACGAAGA GCTCCTCAGG 
AGGGAGGCGG AGGAGCTCTC CTTTTACATC ATCGGCGGGC CGGGGGAGCT CCTCTGTAGA 
AGAGTCGACG GGAGCAACGT GGAGGAGTTT ATCGCCTTGG CGAAGAAGAT GAGTGTCGAC 
CCCCTAGGGG AGCGCGGAGA GTACCACAGC CAAGTGGTAG AGGTGAAGAG GCTCGTCGTC 
TCAGCTGAGG CAAAGTGTGT GCCTGCGGCG GTCTACGGGG GGTACTACAT CGCCGAGATT 
AGGCCGTGA
 
Protein sequence
MKIAFYSGGK ESVYAALLEW PIDAFVFLIY EFPRPSPHIA NLGFAVGFGS RIAPVVVHKL 
PKGREFEEKA RLLRKLGVDV IVAGDVDVED HLRYMEKLAR EVGASLKEPL WGMDHEELLR 
REAEELSFYI IGGPGELLCR RVDGSNVEEF IALAKKMSVD PLGERGEYHS QVVEVKRLVV 
SAEAKCVPAA VYGGYYIAEI RP