| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1268 |
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| Symbol | |
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| ID | 4909766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1177484 |
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| End bp | 1178950 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640125021 |
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| Product | CRISPR-associated helicase Cas3 family protein protein |
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| Protein accession | YP_001056158 |
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| Protein GI | 126459880 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1203] Predicted helicases |
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| TIGRFAM ID | [TIGR01587] CRISPR-associated helicase Cas3 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.0968245 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGACGCG CTATTTTGAG GGCTGTTGAA CTAGTGAGGC GTGGTGTTGA CAAGTTGGTG
TTGGAGTTGC CCACTGGCTA TGGCAAGACG GAGGCAGCGC CTGTGATTTA CAAGGCGTTT
AGGGAGCGGG GGGTGTGTTG GAAGGCTATC CACGTCTTTC CCCTGAGGAC GCTTTTGCAC
AAGACGCTTG AGAAGTACTC CAAGAAATAC GGCGACATCT CTTTCACGTA TCAGGACGGC
GACATCTCCC TCGTCAAGAG CGGGTACGTT AAGGACCCCT ACTTCACCGG CGAGTATGTC
CTCACTACGA TTGATTCATT TGTTCACAAC CTCTTCAAGG CGCCGGTGGC CGAGTTGCCC
CGGCTGTTGC GGGGGAGGTC GGTGCACTAC CACGTCCCCT TTGCCTACAT CTATCCGGCT
TGCGTATTTT TTGACGAGGC GCATATTATG GCTGAGGGGG GACAGAAGGC GGCCGCGGCG
TTGAGGGTCA CTGTGGAGGC CCTCGTCGAC GCCGAGATTC CAGTGGTTGT AATGTCTGCC
ACGCTGGGGG AGTGGAAGTG GGAGGTTTTC AAGGGCTTTG AGTTTGTGAC GCTGGGGCCT
AAGGGCACCG CTGGCTACGA CCCAGATTTT GAGGCCGAGC TTGAGGAGAC AAGGTATGTG
ACAAAGGTAA TACGTGAAGA AGACGTGCTC GCGGTGGCGC AGGAGGAGGT GAAGAGCGGG
AGGAGGGTGC TCATAGTTGT AAACAACATA TCTAAGGTAG TTAAGTGGTA CCAAGAGCTG
AGGGACTACG GCGCCGTGCT TATCCACTCT CTCCTGACTA GGGAGGACAG GCGGAAGGCA
GAGGAGGCGT TGTGCCCCGT TCCGGACAAA TGTGAAGCTC AGGGGGCTAG GATTGTGGTA
GGGACAAGCG CTATAGAGGC GGGCGTAGAT GTCAGCTTTG ACACACTTAT CACATCTGCC
GACTCGCCTG AGTCCGTGGC GCAGAGGGTT GGCAGAGTGT GCAGGCGCGG CGGGAAGTGC
GAGGGGCGGA TATACGTCTT TGGCAAAGAC GCAGAGAGGT ACCTGGGCGT TAGGGAGTGG
CGCCTCCCCT ACAAGGAGGG TAGCTACGTG CCTCTATTGT CGAAAAACTT GGAGTCGGAC
AGGAGACTGG AGTGGTTTTT GCGCCAACTA TACCGCATGC TCTATGTTGA CCCAGATAAC
TTGTCTAAGG TCTTTAAAAT TTTTGGATAC ACCTACGTTA GAGAATACGG CTTGCTTGAG
GTTTGTACCT CCGTTGAATA CAGCCCTGAG AAGTGTTTCT CAACCTCGAT AGACAGAGTC
AACTTCCCCG TGGGCGTGGT AGTAGATGGG AAGGTGCAGG AGGTGGAGAA GGTAGACGAG
AGGTGGCTAA TGGAGTGGGT AGAGAACCAC GGCGAGTTTC CCATTCTCTA TGCGAAGAAG
TATGTGCCAG GCGTGGGACC TCTATGA
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| Protein sequence | MRRAILRAVE LVRRGVDKLV LELPTGYGKT EAAPVIYKAF RERGVCWKAI HVFPLRTLLH
KTLEKYSKKY GDISFTYQDG DISLVKSGYV KDPYFTGEYV LTTIDSFVHN LFKAPVAELP
RLLRGRSVHY HVPFAYIYPA CVFFDEAHIM AEGGQKAAAA LRVTVEALVD AEIPVVVMSA
TLGEWKWEVF KGFEFVTLGP KGTAGYDPDF EAELEETRYV TKVIREEDVL AVAQEEVKSG
RRVLIVVNNI SKVVKWYQEL RDYGAVLIHS LLTREDRRKA EEALCPVPDK CEAQGARIVV
GTSAIEAGVD VSFDTLITSA DSPESVAQRV GRVCRRGGKC EGRIYVFGKD AERYLGVREW
RLPYKEGSYV PLLSKNLESD RRLEWFLRQL YRMLYVDPDN LSKVFKIFGY TYVREYGLLE
VCTSVEYSPE KCFSTSIDRV NFPVGVVVDG KVQEVEKVDE RWLMEWVENH GEFPILYAKK
YVPGVGPL
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