| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1237 |
|---|
| Symbol | |
|---|
| ID | 4910255 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1151435 |
|---|
| End bp | 1151866 |
|---|
| Gene Length | 432 bp |
|---|
| Protein Length | 143 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640124991 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001056128 |
|---|
| Protein GI | 126459850 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | [TIGR00051] acyl-CoA thioester hydrolase, YbgC/YbaW family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.701456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTAA GATTAAAAGT TTTTGTCCCA ATGCCCTTTG AGGCCCGGTA CCGGGTGTAT
TTACACCACA CAGACGCCGC GGGGATTGTC CACTTCTCCC GCCTCTTGGC GCTTGTGGAA
CAGGCGGAGG AGGACTTCTA CGCCAGCGCC GGAGTCTCCT CTATCCAAGG GATATTCCCG
CGGCGGGAGG TCTACGCCTC CTTTACCTAC CCCCTGAGGC GTGGGGACGA GGTGGCAGTT
AGAATATGGG CTGAGGAGGT TAGGAGGAGG GCTGTGAAAT ACCGATTCGA GGTGTTCAAC
CTCACCGCCG GGGTCAAAGC CGCGGAGGGC TACGTGGTAG GCGTCTGCGT GGACGTCAAA
GAGGGAAAGC TCGTCGCGGT GGAGTGCCCC GAGGACTTCC TAGAGGCGTG GAGGAGAAAT
GCTCCTCCTT GA
|
|---|
| Protein sequence | MVLRLKVFVP MPFEARYRVY LHHTDAAGIV HFSRLLALVE QAEEDFYASA GVSSIQGIFP
RREVYASFTY PLRRGDEVAV RIWAEEVRRR AVKYRFEVFN LTAGVKAAEG YVVGVCVDVK
EGKLVAVECP EDFLEAWRRN APP
|
|---|
| |