Gene Pcal_1220 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1220 
Symbol 
ID4909089 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1132582 
End bp1133556 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content61% 
IMG OID640124974 
ProductFAD linked oxidase domain-containing protein 
Protein accessionYP_001056111 
Protein GI126459833 
COG category[C] Energy production and conversion 
COG ID[COG0277] FAD/FMN-containing dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.234885 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGGCCCA AGTCCGTGGA GGAGCTCGTC GGCGCCGTGG CCGAGGCAAA TAGGCTGAGG 
ATAAGGCTCT TCCCCACTTG CCTAGGCTCC AAGGCCGGGA TGGGCCCCCC GGCGGCCTAC 
GACGAATTGC TCGAGCTTAC GTCAATGCCT AAGGTTGTCG AAGTGGACGA GGAGGAGATG 
GTAGTCAAAG TCTCCGCCTG CTACCCAGCG GCCTCTCTCC AAGAGGAGCT CGCGAGGAGG 
GGGAGGAGGC TCGCGATGGA CCCACCTCTC TTCACCAGGT CCTCCATAGG CGGCATAATA 
GCCACAAACT TCTACGGGCC CATGGCGTAT CGCTACATGA CGCCCAGAGA CCAACTGTTG 
AGCGTCCGGG CGGTGACTGG GGGCGGGCAG TTGGTTAAAT TCGGGGCTCC GGTGATGAAA 
GACGTGGCGG GGTACAACCT GAAGCGCCTG TTAGCAGGCT CGTGGGGCAC CCTCGCCGTA 
ATAGTTGAAG CATTCCTAAG GATATACGCC CTGCCGGAAT CCGTCGCCGT GGTGGAGACA 
GACCCCAAGC CCCTCGGCGA TGTGCGCAAG CTACTCTCAA CGGCGGCGCT AGAGAAGAAT 
GGAAAGCTCT ACCTGAGGTT CGAGGGAACA GCGGCTGAGG TGGAGTACCG CGTCGCGAAG 
GCGGGCAGAG GCGAGGTTTA CTATGGCGCA GACGCAGAGG CCCTTTGGCA AAGCGCCACG 
GAGGCCATAG ACGTCTTCTC CTCAGACGTT GTGTACAAGG TGGTGGCGCC CCCAGCCCAG 
TTGCCCCCGC CGCCGAGCGG TGCTAGGTAT GTGAAATACC CACTGCTGGG CGTAATGTAC 
GTGGGCGGGG AGGCGGGGGC TGGCTATAGG CTCAAGCCTC CTCAAAAGTG GCAACTCCCT 
AACGCAGACC TCATGGCCAG AATAAAGCAG GTATTTGACC CAAACGGAGT ACTTGCACCC 
GGGCGGCTTC CATGA
 
Protein sequence
MRPKSVEELV GAVAEANRLR IRLFPTCLGS KAGMGPPAAY DELLELTSMP KVVEVDEEEM 
VVKVSACYPA ASLQEELARR GRRLAMDPPL FTRSSIGGII ATNFYGPMAY RYMTPRDQLL 
SVRAVTGGGQ LVKFGAPVMK DVAGYNLKRL LAGSWGTLAV IVEAFLRIYA LPESVAVVET 
DPKPLGDVRK LLSTAALEKN GKLYLRFEGT AAEVEYRVAK AGRGEVYYGA DAEALWQSAT 
EAIDVFSSDV VYKVVAPPAQ LPPPPSGARY VKYPLLGVMY VGGEAGAGYR LKPPQKWQLP 
NADLMARIKQ VFDPNGVLAP GRLP