| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1054 |
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| Symbol | |
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| ID | 4909302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 994590 |
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| End bp | 995618 |
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| Gene Length | 1029 bp |
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| Protein Length | 342 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640124806 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001055945 |
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| Protein GI | 126459667 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.143641 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATGATG TAGTTTTAAG AGTCCTCGAA TGCCTAGAGT GTAGATATGC CTGCGCCGAA
AAACAAATAT GCAACTTTAA GGAAGAAGAG CTGGCCGCTG TAATAAAAGT AGTGTCGCGA
ATATATGCCG CAGATCTTGA CAAAACCCTA GAGGCTAGGT ACAACTTGCT AAAGAAGATA
AATAAAGACT TCGCCTTGGA GGCGACCTTG GCCACAGTTG GCCTAGCCAA GCTCGCCCCA
TATATCAGGG ATGAAGAGGT CGAAGACCTA GTCCTCATAC CCAACCGACC TATATACATT
GCCACTAGGC GCGGCAAGTT AAAGACTAAT ACCACTGCCA CAGCAGAAAT GATAAAGAAC
TTTTTGCGTC TTGCACATTT GAAAGGGGTG GAGTTGACAT ATGCAAGGCC TTCTCTCAGA
TTTGGGCTAC GCTTCGGCGT GTATAGGCTT AGGATTTCGC TTGATCTGCC TCCAATAGTC
CCCTACCCCC ATGTATATGT GAGAATACAC AGGAGAAAGT TGAGGCTCAG CCACCTCCTC
TCTAGCGGTT TTCTAAGCGT AGAACAGCTG AAGACTATCT ACGCCGCCGT TAAAGGGGGA
AAGCACCTAG TAGTCGCCGG CCCTCCCGGC GCTGGCAAGA CCACTCTGCT CGTGGCAATT
GACGAGCTAA TTCCACCAAC GTGGCAGAGG GTGTACATAG ACGAGGCTGA CGAATTTGAC
GAAGACCCTG ACAAAAACCA AATAAAGATC GCCGATGTAA ACAAGAGTAG GGAAATCTAC
GCATCGCTGA ATAGGAATAT CGACGTGGTT TTCATAGGCG AGTTACAGTA TGAGGACCAC
TTCAACGCCT TTAAAACAGC CACTGAGATA GGGCTACAGA CCTTTGCCAC AATGCACGCC
GCCACTATAG AGGACGCGTT AAAAAGACTG GCGAAATACG TAGAAGTGAA GAACATGGCG
GTTGTGCTTG TGGAAAAGAA GTACGGGGAT GTAGTAAAGA GGAGGGTAGC CGACGTCTAT
GTTAGCTGA
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| Protein sequence | MYDVVLRVLE CLECRYACAE KQICNFKEEE LAAVIKVVSR IYAADLDKTL EARYNLLKKI
NKDFALEATL ATVGLAKLAP YIRDEEVEDL VLIPNRPIYI ATRRGKLKTN TTATAEMIKN
FLRLAHLKGV ELTYARPSLR FGLRFGVYRL RISLDLPPIV PYPHVYVRIH RRKLRLSHLL
SSGFLSVEQL KTIYAAVKGG KHLVVAGPPG AGKTTLLVAI DELIPPTWQR VYIDEADEFD
EDPDKNQIKI ADVNKSREIY ASLNRNIDVV FIGELQYEDH FNAFKTATEI GLQTFATMHA
ATIEDALKRL AKYVEVKNMA VVLVEKKYGD VVKRRVADVY VS
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