Gene Pcal_1013 details

Gene Information

• Locus tag: Pcal_1013
• ID: 4908603
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 954404
• End bp: 954862
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 640124765
• Product: riboflavin synthase
• Protein accession: YP_001055904
• Protein GI: 126459626
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG1731] Archaeal riboflavin synthase
• TIGRFAM ID: [TIGR01506] riboflavin synthase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.495094
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGGCGTGTA TAGGCGTCGT AGACACCACC TTCGCCCGCA TCGACATGGG GTCGCTTGCG 
GTGGATGAGT TGCGCAACCT AATGCCCGAC GCAGTAGTTA AGCGTCTCAC CGTGCCCGGG 
ATTAAGAACA CGGTCTGGGG CGCCCTCAAG CTGATAAAAG AGGGGTGCGA CGCGGTTATT 
GTGCTGGGCT GGGTGGGGCC CACTCAGACC GACAAGTACA GCTACTTGGC CACCTCTATA 
GGCCTTATGC AGTTGCAGAT ACAGACGGGC GTCTTGGTGC TAGACGTCAC AGTTCACGAG 
GACGAGGCAG GCGGCGACGA GAAGCGGCTG AGGGAAATAG CTGTGGATAG GACGAAGAAG 
CATGTGTGGA ACCTATACCA GCTTCTGAGG GGCGACTTGT CCCCGTACGC CGGGAAGGGG 
CTTAGGCAGG GGTATCCACA CGCAGGTGAA ATTGTATAA 

 

Protein sequence

MACIGVVDTT FARIDMGSLA VDELRNLMPD AVVKRLTVPG IKNTVWGALK LIKEGCDAVI 
VLGWVGPTQT DKYSYLATSI GLMQLQIQTG VLVLDVTVHE DEAGGDEKRL REIAVDRTKK 
HVWNLYQLLR GDLSPYAGKG LRQGYPHAGE IV