| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0988 |
|---|
| Symbol | |
|---|
| ID | 4909714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 932014 |
|---|
| End bp | 932490 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124738 |
|---|
| Product | 30S ribosomal protein S19e |
|---|
| Protein accession | YP_001055879 |
|---|
| Protein GI | 126459601 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2238] Ribosomal protein S19E (S16A) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACTTCGG TGAAAGACGT GCCAGCAGAC TTGTTAATAG CGGAGTTGGC GAAGTACATA
AAGGACAACG TGCCGCAGGT CAAGCCGCCT GTCTGGGCGC CTTTTGTAAA AACTGGGGCC
AATAAGGAGA GGCCGCCCAT GAGCGAGGAC TGGTGGTACA TACGTGCCGC CTCTATTATG
AGAAAGCTTT ACATATATGG ACCCGTCGGC GTCGGTTCTC TTAGAACCGC CTATGGCTAC
AGGGCCAAGA TAGGCGACAA GACTAGGCCC GAGAGAACTA GAAAGGCAGG CGGCGCAATA
ATTAGGAAGA TTCTACAACA GCTAGAACAT GCGGGTTTTG TGACAAAGAC CAAGAGGGGG
CGCGTGTTGA CGCCAGAGGG CAAGTCTCTT GTGGACAGAG TCGCCGCCCG TATTGCAAAA
GAGTTGGTGA AGCAGAGGCC TGAGCTCGCC AAATACGTCG CGCCGCCCAA GGAGTAA
|
|---|
| Protein sequence | MTSVKDVPAD LLIAELAKYI KDNVPQVKPP VWAPFVKTGA NKERPPMSED WWYIRAASIM
RKLYIYGPVG VGSLRTAYGY RAKIGDKTRP ERTRKAGGAI IRKILQQLEH AGFVTKTKRG
RVLTPEGKSL VDRVAARIAK ELVKQRPELA KYVAPPKE
|
|---|
| |