| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0962 |
|---|
| Symbol | |
|---|
| ID | 4908437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 909910 |
|---|
| End bp | 911091 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124710 |
|---|
| Product | aminotransferase |
|---|
| Protein accession | YP_001055853 |
|---|
| Protein GI | 126459575 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.124285 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGAT TTTCGTCCAG AGTTGCCGCA TTCCGCGAAT CCCCCACGCG GAAGATCGAT
GAACTTAGAG AAAGGCTGAG GCGTGAGAAC CGCGATGTAA TACTGCTCTC CACGGGGCAG
CCCAGCGTCC CGCCTCCTAG AGAGGTAAGA GAGGCGCTGG GAGAGTTGTT GAAAGTCGAC
TCAATGGACC TATACGGCTA TACCCCCTCC CAGGGGATAT ACGAGCTGAG AGCCGCTATT
TCAGAAGACT TGAAAAAGCT CGGCGGCCTC GACGTGCCGC CGGATCAGAT CGTCGTCACG
GCCGGGGGGC AGGCCGCCAT GTTTTCCACG CTGGCCACCG TGGTGGAGCA AGGCGACGAG
GTCGTAGTCA CAGACCCGAC GTACTTCGGC TACAGGCCTC TGCTTGAATA CTTTGGCGCA
GTGGTGAAGC CTCTGAGGAC GCGGATAGAG GAGGGCTTTC AGCCAGACCC AGAGCGGCTT
AAAACGCTAG TTGGGAGAAA GACAAAGGCG GTGGTCCTAG TATCGCCAGA CAATCCCACT
GGCCGAATTT TAAACAGGGA GGTGGCCAAG GCGGTGGCCG ACTTGGCCCA AGACTACGAC
TTCTGGATTA TTACAGATGA GGCGTACAAG ACGTTGATAT ACGAGGGGGA ACACGTCTAC
TTCTATAAAC TGGCCCCAGA GCACACAATT TCTATAAACA CTTTTTCAAA GGACCCGGCC
ATCCCTGGCT GGCGCCTGGG CTATGTATAC GGCCCCAAAG ACGTTGTCCA AAAGGTAAAA
CTCGCCAACG AGGAGATGGT GTATTGCCCT CCGTCATTTG CCCAAAGAAT GGTTGCAATC
TACTTAAGAT CTGAGGCGAG GACGAGGTAC ATAAGAGAAG TTGTGGAGGT TTATCGCCAC
AAGCGCGACG TAGCACTGGC GGCAGTTAAG AGGTACATAC CCGAGGCCAA GTTCGTGCCC
CCGTCTGGCT CCATGTTCAT ATTCGTAGAC TTATCTAGGT ATATAGTAGA CGGCGAAGAA
TTTGCCAAAG TCCTCCTCGA GAAACACGGC GTAGCCACAG TGCCCGGCTC GTACTTCAGC
GAAGTATACA AGGCGGCTCT ACGCATCTCC TTCGTAACCG AAACCACAGA GAGAATAGAG
GAAGGAATTA GGCGGATAGG AGAAGCCCTC TCCGCAACCT AG
|
|---|
| Protein sequence | MRGFSSRVAA FRESPTRKID ELRERLRREN RDVILLSTGQ PSVPPPREVR EALGELLKVD
SMDLYGYTPS QGIYELRAAI SEDLKKLGGL DVPPDQIVVT AGGQAAMFST LATVVEQGDE
VVVTDPTYFG YRPLLEYFGA VVKPLRTRIE EGFQPDPERL KTLVGRKTKA VVLVSPDNPT
GRILNREVAK AVADLAQDYD FWIITDEAYK TLIYEGEHVY FYKLAPEHTI SINTFSKDPA
IPGWRLGYVY GPKDVVQKVK LANEEMVYCP PSFAQRMVAI YLRSEARTRY IREVVEVYRH
KRDVALAAVK RYIPEAKFVP PSGSMFIFVD LSRYIVDGEE FAKVLLEKHG VATVPGSYFS
EVYKAALRIS FVTETTERIE EGIRRIGEAL SAT
|
|---|
| |