| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0932 |
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| Symbol | |
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| ID | 4909696 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 883089 |
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| End bp | 883913 |
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| Gene Length | 825 bp |
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| Protein Length | 274 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640124680 |
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| Product | exosome complex RNA-binding protein Rrp42 |
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| Protein accession | YP_001055823 |
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| Protein GI | 126459545 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2123] RNase PH-related exoribonuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATCGA TATCTCCGTA CGGAAAACGC TTTATCTCCT ACCTAAGGCG GGAACAGATA
AGAAGACTCA TTGCGTCGAA GGCCAGGATA GACGGCAGAG AAGTAGACCA AGTGAGGCCC
GTCGAGGTGA AGACCGGAGT CGTAAAAACC GCCGATGGGT CCGCAGAGGT AAAACTCGGC
AAGACGCACG TGGTGGCAGG CGTCAAAATA GGCCTCGGCC AGCCGTTCCC CGATGCGCCA
GACGAAGGCG TGCTGGTAGT AAACGCAGAA GTTCTCCCCC ATGCTTCGCC TTACACAGAG
GTGGGGCCGC CCGACGAATT CGCCATAGAA CTCGCCAGAG TAGTAGACCG CGGCCTTAGA
CACTGCGGCT ACGTCGACTT TAAGAAGCTA TCCGTGGAGG GGGGAAAGGC CTACGTGCTA
TGGGTAGACC TCTACGTCAT CAACGACGAC GGCAACCTCG TCGACGCCGC CAACCTAGCC
GCGGTGGCCG CGTTAAAGAA CGCCGCCCTC CCCGCCGTGG TAAAAGACGA GACAGGCGCC
GTGAAGCTAG ACCGGAACAG CAGAACCCCC ATGCCGCTGG ACTTAGAAAA GGCGCCGATA
GCGGTGTCCG TAGGAAAAAT AGCAAACGTA CTATTTCTAG ACCCCATATT CGAGGAAGAG
CTATCTCTAG ACGGCCGCAT CACCTACACC TTCGCCCAGG AGAGAATAGT CGCCATACAA
AAGACCCTAG GCTCATTTAC ACAACAAGAG CTTGAAGCCG CCCTAGACCT AGCCTGGAGA
GGCAGAGAAA GCTACTTGGC GTCGCTCAAG GAGGTGCTAC AATAG
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| Protein sequence | MASISPYGKR FISYLRREQI RRLIASKARI DGREVDQVRP VEVKTGVVKT ADGSAEVKLG
KTHVVAGVKI GLGQPFPDAP DEGVLVVNAE VLPHASPYTE VGPPDEFAIE LARVVDRGLR
HCGYVDFKKL SVEGGKAYVL WVDLYVINDD GNLVDAANLA AVAALKNAAL PAVVKDETGA
VKLDRNSRTP MPLDLEKAPI AVSVGKIANV LFLDPIFEEE LSLDGRITYT FAQERIVAIQ
KTLGSFTQQE LEAALDLAWR GRESYLASLK EVLQ
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