| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0880 |
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| Symbol | |
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| ID | 4908164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 838082 |
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| End bp | 838870 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640124629 |
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| Product | shikimate dehydrogenase |
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| Protein accession | YP_001055772 |
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| Protein GI | 126459494 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTACTTCG CCGTAATTGG GAAGGGAATT AGGGGAAAGT CGGCCAGCCC AGCCATGCAC
ACGGCCTCTT TCAAGGCGCT CGGCATCGAC GCCGTGTACG TGGCGCTGGA CGTGCCAAGG
GAAGAGCTCG GCTGCTTTGC CCAACTCGCC CGCCTAAACT TCCGCGGGTT CAACGTCACA
ATACCACACA AGGAGGAGAT AGTGAAGTAC TTAGACGCCT TGGCGGCGGA GGCGAGGGCC
GTAGGAGCCG TAAACACAGT GCTCGTGGAG AGGAACCTCT TGGTGGGCTA CAACACAGAC
GCCCTAGCTG TATATAACCT CGCCGGGGAC TATATAAAGG GAGCCGACGT GTTAATAATA
GGCGCAGGCG GCGCGGCTAG GGCAGCCGCC TTCGCCGCAG TCAAGGCCGA GGCGCGGAGG
ATCTATATAA TGAACAGGAC GGCGGAGAGG GCTGAGGCTC TGGCCAAGGA GTTTGGGGAA
AAATTCAGTC GCGAAGTGAC AGCAGTTAGA TGGGGCGAGG CTCCGCCTGC CGACGTGGTA
ATAAACGCGA CCCCCATACA CGACCAAATA CTCGCCGACT TGAGCAAGGC CGCCCTCTAC
GTGGAGTTCG TCTACACCCC AACCCCCCGC ACTAGGATGG TCCAAGAGGC GGAGAAGAGG
GGGGTCAAGG TGGTGGACGG AGTAAGCCTC TTAGTGGAGC AGGGCGCCCT CGCCGAGAGG
ATATGGCTGG GGGTAGAGCC CGACAGAGAG GTCATGAGGA GGGCCGTGGC GCAGTTCCTC
GGGCTATGA
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| Protein sequence | MYFAVIGKGI RGKSASPAMH TASFKALGID AVYVALDVPR EELGCFAQLA RLNFRGFNVT
IPHKEEIVKY LDALAAEARA VGAVNTVLVE RNLLVGYNTD ALAVYNLAGD YIKGADVLII
GAGGAARAAA FAAVKAEARR IYIMNRTAER AEALAKEFGE KFSREVTAVR WGEAPPADVV
INATPIHDQI LADLSKAALY VEFVYTPTPR TRMVQEAEKR GVKVVDGVSL LVEQGALAER
IWLGVEPDRE VMRRAVAQFL GL
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