| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0860 |
|---|
| Symbol | |
|---|
| ID | 4908531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 820487 |
|---|
| End bp | 822262 |
|---|
| Gene Length | 1776 bp |
|---|
| Protein Length | 591 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124609 |
|---|
| Product | carbon starvation protein CstA |
|---|
| Protein accession | YP_001055752 |
|---|
| Protein GI | 126459474 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1966] Carbon starvation protein, predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.983517 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAACA CGCCGGCCCC CTATATCTTG TTGGGGCTAA TACTATACTT TTTGACATAT
TGGTTCTACG CCAGGTGGGT GGACAAGAAG ATTTGGGAAA GCGACCCCAA CAGGCCCACG
CCAGCGAAGC TCTACTTCGA CGGCGTGGAG TACTTCCCAG TGTCTAAGTA CGTGCTCTTC
GGCTACCAGT TCAAGTCGGT GGCTGCGCTT GGCCCCATTG TGGGCCCCTT GACTGCCGTC
CTCTTCTTCG GCTGGGTGCC TGCCCTCCTC TGGGTGATAT TTGGCAACAT GTTCATTGGG
TGGGTACAGG ACTACAGCTC CATGATGCTC TCCATAAGAA ATGAGGGCCG CTCAATGGGG
CCGATAACCT ACAGACTGCT TGGAGATAGA GTTCGGAAAA TCTTGCTAAT ATATCTAATC
TTCTACTTGA TAATTATCAC GGCGGTTTTT GAGTGGGTGA TCATCGACGT GTTGAACAGA
GTGCCTGGGA CCTTCACTGC CGTGTTGTTT GTATTGTTCG GCGGCGTAAT ATTCGGCGTT
CTTATCTTCC GCATGAGGAT GGACGTACTC TTGGCGACCC TCATAGCCCT CGCTATAGTG
TTCGTGGGCT ACTTCACCGT GGCACTAGTT CCCGCAGTTA GGGCGCCGGG GACCAACTTC
CTGGACCCGC CGGACTTCTT CAAGGCACAC AACTTCAACC CAGCTCTGAC GTGGCCTGGC
ACGTTGACCG TGGCCTTCTG GCTGGTGGTA CTCTCCATCC TCTACTACAT AGCCGCTGTG
ACTCCGATGC CCAAGTTCCT ACTGCCCACC GTGTACGTGG GATATCTTCC GAGCATTATC
GCCCTAGTGC TCGTCTTAAT TGCCGCGATC TTTACGCCGT TGACGGGGCT GACGATACAG
CAGACGCCCG TAAAGGCTCT CTACGTAGAT CCGCTTCAGA ACCCCCAGGG CGGCCCGCTG
TGGCCAATAC TCTTTGTGAC AATTGCCTGC GGAGCGATCT CTGGCTGGCA CAGCCTAGTC
TCGTCGGGTC TAACGCCTAA GCAACTTGAG TATGAGACAG ACGCCTTGCC AGTGGGCGGA
GGGGCCATGA TGACCGAGGG CGCCGTGGCC CTTTCCTCCA TCGCCGCAAT AATGGTGCTA
TCACAGCCCC CGGCGGGCGC CGCGGCGTAT GTGCAAGGTG CGACTCTGCT CACCACCAAG
CTTCTGAACG TCCCAGACGT GTACATGAAC ATCTTGTACG GCATCTTCGT GACGGTGATG
GGGCTTATAA CATCGATGCT CTTTGTGAGA GTGTTCAGGC TGATAATGGC GGAGCTGTTT
GAGGAAAGCC CGCTTGGCAA CAAGTACATA TCTCCCCTGG TGATACTGGC CATCTCCGGC
TTCTTGGCGT TTGTGGGTAG CTGGACAAAT CTCTGGATAT TCTTCGGCGG CACCAACCAG
CTACTGGCCG GCCTAGCGCT GTTACTAGTG GCAATATTCC TCGCCAGCAT AAAGAAGCCC
ACGGCCTACG TCTTTGTGCC GGGCATATTC ATGGCCATCA CCACCCTTGC TGCGCTGGCT
TGGGAGACGT ACGTATATGG CCTATACGCA TACTTAGGCA AGCCGATAGG GGTTCAAGCG
GCGGTCGCAG CCTTGTACGG CAAAGACATA GTTACAATTT CCAACTTGAT CTCCGCGGCG
TTTGGAGCGC TGTTGCTTGT ACTAGGCGCA ATAACCACGT ATTACCTAAT CACAGGCTGG
GTTAAATACA AGAGGGGGGA GGCGGTAAAG AAATAA
|
|---|
| Protein sequence | MLNTPAPYIL LGLILYFLTY WFYARWVDKK IWESDPNRPT PAKLYFDGVE YFPVSKYVLF
GYQFKSVAAL GPIVGPLTAV LFFGWVPALL WVIFGNMFIG WVQDYSSMML SIRNEGRSMG
PITYRLLGDR VRKILLIYLI FYLIIITAVF EWVIIDVLNR VPGTFTAVLF VLFGGVIFGV
LIFRMRMDVL LATLIALAIV FVGYFTVALV PAVRAPGTNF LDPPDFFKAH NFNPALTWPG
TLTVAFWLVV LSILYYIAAV TPMPKFLLPT VYVGYLPSII ALVLVLIAAI FTPLTGLTIQ
QTPVKALYVD PLQNPQGGPL WPILFVTIAC GAISGWHSLV SSGLTPKQLE YETDALPVGG
GAMMTEGAVA LSSIAAIMVL SQPPAGAAAY VQGATLLTTK LLNVPDVYMN ILYGIFVTVM
GLITSMLFVR VFRLIMAELF EESPLGNKYI SPLVILAISG FLAFVGSWTN LWIFFGGTNQ
LLAGLALLLV AIFLASIKKP TAYVFVPGIF MAITTLAALA WETYVYGLYA YLGKPIGVQA
AVAALYGKDI VTISNLISAA FGALLLVLGA ITTYYLITGW VKYKRGEAVK K
|
|---|
| |