| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0848 |
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| Symbol | |
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| ID | 4908733 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 808686 |
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| End bp | 810098 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 640124597 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001055740 |
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| Protein GI | 126459462 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.762199 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGACAA AAAACCTAGT AATAATAACC ACCATTATCG TTGTTATTAT AGCTATTGGA
ATAGCGTCTT GGCTCCTCAC GCCTCAACAG CCCGCACCGG TAACACCCAC AACCGCGAAA
CCCACAACTA CTACTCAACC GGCCACTACG CCAGCACAAA CAACGACAAC TCAAGCCACC
TCCTCGCCTT CTCCCTCTGC TAAATGCCCC GATGAAATTG TTATAGGCAC CGCAATGCCC
ATCTCTGGGA GATATGCGGC TGAGGGGCAG TACTCGCTCT GGGGCGCCTT GGCTGTGGTC
AATTGGATTA ACGACCAGGG TGGGCTAGAC TGCGGCGGTA AGAAGGTGAG GGTGAGGCTT
GTGTATAGGG ACAGCGAATC TAAGCTAGAG CTCGCGCAGA GCATCACCGA GTCTCTTATC
ACTCAGGACA AGGTGAACTT CCTCCTCAGC CCCTACGGCT CCGACTTGGC GCTCGGCGTT
TCGTCAATAG CTGAGAAATA CGGCGTCCTC ATGGCGGTGG TGGGGGCCTC CTCCGACCGC
ATATTCCAAC AGGGGTTTAA GTACGTCTTA GGAGTAGCCG CGGTGGCGAG TCAGTACATG
GTGCCCGTCC TCGATATGAT AAAGCAGAGG GATCCGACGG TAAAGACTGT GGCCATTTTG
TACAGAGACA GCGAGTTTAA TAGGCAGGTG GCAGAGGGGG CAAAGGCGTA CGCCGAGAAG
CTCGGCCTCC AGGTGGTGGT ATACGAGGTG TACCCCTCGT CTCCCAAGGA CCTCACGCCC
CAGATTCTCA AGGTTAAACA AGCGAACCCC GATGTAATAA TCGTGGCGTC GCACTTCGCC
GATGGGCAGT TGGCCGTGCA ACAGTTGGCG GAGCAGAAGG TGAATGCAAA GGCCATCGCC
CTCTCCGTGG CCCCACTGGT GCCCGAGTTC TACACGTCGT TGAAGAGCTT AGCCGAGTGT
ATACTGGGCC CGTCTCACTG GGAGCCCGGA GTCCGCTACA CGCCGGAGTT AGCCAAGCAG
AGGGGAGTCG AGTGGTTTGG CCCCACGAGA GAGGAGTTCA TAACGTACTT CAAGAAGGTG
GCTAAGGAGA TGAGCGGCAA AGAGGTGGAC CCAGGCTATC ACGCCGCGTG GGCCGCGGAG
GGCGTCTTGG CGCTGTTATA CGGAGTCTAC AAGGCCCAGT CGGCGAGCTC CAACGATGTG
CTAAAGGCCT TGCAAAACGC CAGGTTTATG ACTTTCTTCA GCGAGTTTAA GCTAGACCCC
GCCACGAATT TAAACGTGGC CCACTCAATG GTAGTCACCC AGTGGCAGAA CGGCACAAGG
GTTGTGGTGT GGCCCTCAGC CGTCGCCGAG GGCAAGCTGG CCTACCCCTC GCTTACGTGG
GAGGCGAAGC TGGGCGGCGC CGTCTGTAAG TAA
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| Protein sequence | MQTKNLVIIT TIIVVIIAIG IASWLLTPQQ PAPVTPTTAK PTTTTQPATT PAQTTTTQAT
SSPSPSAKCP DEIVIGTAMP ISGRYAAEGQ YSLWGALAVV NWINDQGGLD CGGKKVRVRL
VYRDSESKLE LAQSITESLI TQDKVNFLLS PYGSDLALGV SSIAEKYGVL MAVVGASSDR
IFQQGFKYVL GVAAVASQYM VPVLDMIKQR DPTVKTVAIL YRDSEFNRQV AEGAKAYAEK
LGLQVVVYEV YPSSPKDLTP QILKVKQANP DVIIVASHFA DGQLAVQQLA EQKVNAKAIA
LSVAPLVPEF YTSLKSLAEC ILGPSHWEPG VRYTPELAKQ RGVEWFGPTR EEFITYFKKV
AKEMSGKEVD PGYHAAWAAE GVLALLYGVY KAQSASSNDV LKALQNARFM TFFSEFKLDP
ATNLNVAHSM VVTQWQNGTR VVVWPSAVAE GKLAYPSLTW EAKLGGAVCK
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