| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0825 |
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| Symbol | |
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| ID | 4909144 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 784134 |
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| End bp | 785312 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640124574 |
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| Product | extracellular ligand-binding receptor |
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| Protein accession | YP_001055717 |
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| Protein GI | 126459439 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACATCT CAGCGGAGGA TAAGGTGGCG AGGGGGACTC CTCCGCCGCA GACTCCTCCA
CAAGGCTACC TCACTCCGGT CATCGTAAAT GTGCAACCCA CCCAGGCGCA GACCGTGGTT
GAGATAGGCG TCTTGCAACC GCTCAGCGGG AGACTTGCCT CTCTGGGCGA GTTGGCCGCC
GCCGCGGCTA GACTGGCGGA GCAGGATGTG AACGCGTACT TGACTAAGAT AAATGCCACG
TTTAGGGTGA GAGTCGTGGT CGCCGACACG GCTGCGGATC CCACAAAGGC CCTTGATCAA
ATGAAGGCTC TTCACAGCCG CGGCATAAAA TTCTACATAG TTAGAACGTC GGGCGAGGTC
CGCGCCATGA AGTCGTATGC GGATGAGAAC AAGCTCCTCG TCATCTCTGT CTCCTCCACT
GCCCCGGCCT TGGCTATACC TGGCGACTAC GTCTTTAGGC TCCCGCCAGA CGACACGAAG
CAGGTTAAGG CTATTTCCAA GGTGCTTCAA GACGACGGTA TTAAGGCTGT TGTGGTAATT
TGGAGGAACG ACGACTGGGG CAATGGGCTG GTGAAGGGTC TCGAAGACAT GGCGAAGTCC
CGGGGCTTTG AGGTCATTAG GGCTTCGTCT TATGACCCGC AGAAGGGCGA GTTCTCCACT
GAGGTCAGCG TGTTGGCCCA GAAGGTCAAA GACGTTGTTG CAAAATATGG GGCAGACAAG
GTGGCCGTCG CGGCGTTTGG ATTCGCCGAG CTGCAGACCA TTTTTATAAC TGCGAAGAAC
TACCCAGAGC TTGCACAGGT TAGGTGGTAT GGGGCCGATG GAAGTACGGG GCTCTCCGAG
CTCCTTGTCC CAGCGGCGGC GGAGTTCGCG GTCAAGGTAG GCGGCTTTGT GAGCCCCAAG
TTTGCCCCAG CGCGGAGCGT ATACTACGAC CGGGTGCGCA ACTACATATT AAGCGAGTAC
AAGAGAGAGC CTGACTCATA TGCGTACAAC GCCTACGACG CCGTGTGGCT AATAACATAT
TCAATACTTC AAGCGGGCTC AGCCGACAGC GAGAGGGTGT GGCAAGTGTT TCCGCAGGTG
GCGGCTAAGT ACTTCGGCGC GTCTGGCTAT ACTAAGCTGA ACGAGGCTGG GGATAGAGAG
AGCGGCGACT ATGAAATCTG GGCCATTGTT AAAAGCTGA
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| Protein sequence | MYISAEDKVA RGTPPPQTPP QGYLTPVIVN VQPTQAQTVV EIGVLQPLSG RLASLGELAA
AAARLAEQDV NAYLTKINAT FRVRVVVADT AADPTKALDQ MKALHSRGIK FYIVRTSGEV
RAMKSYADEN KLLVISVSST APALAIPGDY VFRLPPDDTK QVKAISKVLQ DDGIKAVVVI
WRNDDWGNGL VKGLEDMAKS RGFEVIRASS YDPQKGEFST EVSVLAQKVK DVVAKYGADK
VAVAAFGFAE LQTIFITAKN YPELAQVRWY GADGSTGLSE LLVPAAAEFA VKVGGFVSPK
FAPARSVYYD RVRNYILSEY KREPDSYAYN AYDAVWLITY SILQAGSADS ERVWQVFPQV
AAKYFGASGY TKLNEAGDRE SGDYEIWAIV KS
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