Gene Pcal_0779 details

Gene Information

• Locus tag: Pcal_0779
• Symbol: rps5p
• ID: 4910162
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: -
• Start bp: 747677
• End bp: 748285
• Gene Length: 609 bp
• Protein Length: 202 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 640124528
• Product: 30S ribosomal protein S5P
• Protein accession: YP_001055671
• Protein GI: 126459393
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01020] ribosomal protein S5(archaeal type)/S2(eukaryote cytosolic type)

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 38
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGCGTCG TCGATTTAAG CCTTTGGGAG CCTAAGACGG CTCTTGGGAG AATGGTGAAA 
GAGGGGAAGA TAAGGACTAT AGATGAGATC TTTGCGAACA ACCTCCTAAT AAAGGAGCCC 
GAGATTGTGG ATATTCTGCT CCCGGGACTA AAGCAGGAGC TTTTAAACCT AAACCTAGTC 
CAACGCCAGA CGCATGCTGG CGAGAGAAAC CAGTTTCAGG CGGTGGTGGC GGTGGGCAAC 
GAGGATGGGT ACGTTGGCGT GGGAATTGGG AAATCTAGAC AGGTGAGGCA GGCCATTGAG 
AAGGCCACTA GGGAGGCCAA GTTGAACATT ACGCCCGTGA GGCGCGGCTG CGGCTCTTGG 
AAGTGTTCTT GCGACGAGCC TCACAGCGTG CCATTTGTGG TAAGTGGGAA GTCCGGGAGC 
GTAGAAGTGA CGTTAATCCC GGCGCCTAAG GGCGTGGGCC TTGTGGCAGG CGACGTGGCC 
AAGGTGGTGT TACGTCTGGC GGGGATAAAG GACGTGTGGA CAAAGACTAG AGGCGACACT 
AGAACTACGT TGAACTTTGC GCTGGCGGTG TTCAACGCTC TTAGAAACAC CTACTACTTC 
AAGCTATGA 

 

Protein sequence

MSVVDLSLWE PKTALGRMVK EGKIRTIDEI FANNLLIKEP EIVDILLPGL KQELLNLNLV 
QRQTHAGERN QFQAVVAVGN EDGYVGVGIG KSRQVRQAIE KATREAKLNI TPVRRGCGSW 
KCSCDEPHSV PFVVSGKSGS VEVTLIPAPK GVGLVAGDVA KVVLRLAGIK DVWTKTRGDT 
RTTLNFALAV FNALRNTYYF KL