| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0716 |
|---|
| Symbol | |
|---|
| ID | 4908365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 675204 |
|---|
| End bp | 677663 |
|---|
| Gene Length | 2460 bp |
|---|
| Protein Length | 819 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640124465 |
|---|
| Product | helicase domain-containing protein |
|---|
| Protein accession | YP_001055608 |
|---|
| Protein GI | 126459330 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00000339602 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCG CCGTCACACC GACAAAGGTA CTGGCGGCGT TTAAACAGGC GGGAAAGGAG
CCCTACCTCC ACCAGCTAGA CTTGGTGTCA GACCTCCTCC TCTTGCCCAG GTTTAAAGTC
CTCTTGGCAG ACGACGTGGG GCTCGGCAAG ACAATTGAAA CCCTTGCCTA TGTGAAATTG
GGCGTGGAGA GCGGGCGCTT GGCCAAGGTG CTTATAGTTG TCCCAGCCGC GCTTCTCGAC
CAGTGGCTAG ACGAGCTGAG GAAATTCGGC TTCACAGACG AAGAGGTCTA CGTGGCTAGG
GAGGCCGTCT TGGCGCCTGG GAGGCCTATC TACGTGGTGA CCATGGACAG AGCAAAGAAG
GACGAGTACC TCAAGTTGCT GGAGCAAGTC CCGTGGGACT TAGTGGTGAT AGACGAGGCT
CATAAGCTCC GCCTAGACAC ACAGCGGCTG AGACTAAAGA CGTTGTGCGA GAAGGCCAAG
AGCTGTCTGC TACTCACCGC AACTCCGCAC ACTGGCGATG AGAAGAGCTA CGCCATCTTG
AGGGGCACGG TGGATAAGGT GGTGAGGAGA GAGAAGAGAG ACGTAGAAGA GTATGAAATG
CGGAAAATCT TCCCCAACAT ACGCTACTAC ATCGTCAGAG TAAAAGCCAC GCAAGAGGAG
GCCAAGGCCT TGAGGGAGAT AATTAGGCTG TTGGAAGAGG CGGAGGTAGA GCCAATTGTC
AGATACGTGG TCCTTAAACG CGCCTTGTCC AGCCCCCTGT CCCTAATCAC GACGTTGAAC
AAGGTCGTAG GCGGCACCTG CACCGAGGAG GACCTGGAAG AGGGCGAGTT AGACGGGTGT
CTCTCCCACG TGCAAGACCT CTTGAAAAAC GTCAAAGCGT ACACCGCCGA GGATAGGAAG
CTCTCTGCGC TGAAGAGGGT TTTAAACGGC CCACTGGCCG GCAGAAAGAC TATAGTGTTC
ACCGAATACG CCACCACGGC CCAGTACCTC TTCCAAGCGC TGGCGGAGAA CTGCGACGCG
GAGTGGGGCG AGGGGTTTGG CAAAGCCTAC TGCAAGGACG GCGCGGTCAT GTACACGACT
CACAAGGCGA GGGTGGAGCT CGGCGACGCG ATAAATAGAG AAATCGAGGA GCTGGCCGCC
AAGCCCAGGC CAGTGCTAAT AACCACGGAC ATATTCACCG AGGGCGTCAA CCTCCAGATG
TTCGACGCAG TGGTGAACTA CGAAGTTGTG TGGAGCCCCA CAAAACACGT CCAGCGGATA
GGCAGAGTGT GGCGGCTGGG ACAGAAGAGC CAAGACGTGG CCGTGGTAGA CATGGCGCTA
GACGCGCCCG GGACGAGGAG CGAGTTTGAG ATGTACGTCG AGTACTTAGA TAAGATCTAC
CAGATAAACC TCACCGCGCT CACTCCCCAC GCCTACGCCG AGTACGAGAT ATACGAATTC
AAGGGAGAGC TAGAGGAGAA GATCAAAGTC AAGATATCCG ACCTCGGAGG GGTCTACATA
CCCACAAGCG ACGCCATAGC CGCCATCTTC GAAAAACGGC TCGAAGAGCT GAGAGAAAAA
GTGGAAAAAC TGCTACAGCT CAAGGAGGCG CTGAGGGGTG CCAAGGACCG CGAAAAACTC
CTCAAAGACC TAAAGGCCAA GCTGGGCTGG CCGCCGGAGA AGAGCCCAGA GCCCGGCGGT
GGGTACTACA AGGCCAAGCT AGTGGTAGAA GTGGGCGGGC TCCCCGCATT AGAAGAGAAC
CTACTGGCCA GGCTCGACAC GCCGCTAAGT AAGACGAGAC AAGTAAAAGG CGATGTGGTG
TACAGAGAGG TGGAGCTAAG CGGCGTAGAG ATACAGGGAG AGCCAGGCGA AATAAGGCAG
GACGAGAAAA AGAAAATAGA GCAAGCCGCC TTGAAGTTTT TTGCAGACCA CCTTTGGACC
TACGCGAAGC AACTCATAGG AGACCCAAGG CTGAGAGACA GCGTTAGGCT GAGAATACAG
GTAGAGGAGA GAGCCATAGT CACCACAAGC GTCTCTCTAG ACGACTTCGA CGCCGCGGTG
GAAGAGGCCC TGAAGAGGAG TGACTATAGG ACAAAGACAG AGCACACCGC GGTTAAGTGC
ATAAAGGAGT ACCTCGTCAA ACAAGGCTAC AGGATTGTCC GCGACTATGA CAGCGCTCCC
CGGCCCTTTG ACATGGTCGT AGAAAAAGGC GGAAAGAGGT ACACCGTGGA GTGCAAAGGG
CGCTACATAC GGCCGGGCGA GGCGCTGTCT GTGACCCTGA CGGCAAACGA GATGGACTGG
GGCTCCAAGT ACCCCGACAG GCACCTAATA TGCGTAGCCA CCGTAGAAGG CACGAGGTGC
AACACCGTAG AGTGCTACAC CTTTGACCAA TTCTTAAAAA CGTGGAAAGT GGCCACCAAG
CGGGGTCTCG ACTACGTGGT AGAGGCAGTC AAAGAAAGCG TCGATAAAGA GAGGCAATAG
|
|---|
| Protein sequence | MASAVTPTKV LAAFKQAGKE PYLHQLDLVS DLLLLPRFKV LLADDVGLGK TIETLAYVKL
GVESGRLAKV LIVVPAALLD QWLDELRKFG FTDEEVYVAR EAVLAPGRPI YVVTMDRAKK
DEYLKLLEQV PWDLVVIDEA HKLRLDTQRL RLKTLCEKAK SCLLLTATPH TGDEKSYAIL
RGTVDKVVRR EKRDVEEYEM RKIFPNIRYY IVRVKATQEE AKALREIIRL LEEAEVEPIV
RYVVLKRALS SPLSLITTLN KVVGGTCTEE DLEEGELDGC LSHVQDLLKN VKAYTAEDRK
LSALKRVLNG PLAGRKTIVF TEYATTAQYL FQALAENCDA EWGEGFGKAY CKDGAVMYTT
HKARVELGDA INREIEELAA KPRPVLITTD IFTEGVNLQM FDAVVNYEVV WSPTKHVQRI
GRVWRLGQKS QDVAVVDMAL DAPGTRSEFE MYVEYLDKIY QINLTALTPH AYAEYEIYEF
KGELEEKIKV KISDLGGVYI PTSDAIAAIF EKRLEELREK VEKLLQLKEA LRGAKDREKL
LKDLKAKLGW PPEKSPEPGG GYYKAKLVVE VGGLPALEEN LLARLDTPLS KTRQVKGDVV
YREVELSGVE IQGEPGEIRQ DEKKKIEQAA LKFFADHLWT YAKQLIGDPR LRDSVRLRIQ
VEERAIVTTS VSLDDFDAAV EEALKRSDYR TKTEHTAVKC IKEYLVKQGY RIVRDYDSAP
RPFDMVVEKG GKRYTVECKG RYIRPGEALS VTLTANEMDW GSKYPDRHLI CVATVEGTRC
NTVECYTFDQ FLKTWKVATK RGLDYVVEAV KESVDKERQ
|
|---|
| |