Gene Pcal_0708 details

Gene Information

• Locus tag: Pcal_0708
• ID: 4908199
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 670685
• End bp: 671344
• Gene Length: 660 bp
• Protein Length: 219 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640124457
• Product: lysine exporter protein LysE/YggA
• Protein accession: YP_001055600
• Protein GI: 126459322
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG1280] Putative threonine efflux protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.00000114889
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGTCCCTCG CCACCGTCGT GATAGAAACC TTGATGATAA CCCCATCAGG CGCCCTCTCC 
CCCGGGCCGT TAACCACGGC GACGGCCGTC CTCGGGGCCC GGGCAAAGAC CCCCGCCAGC 
GGCGCCGCCG CGGGGCTAGG CGTGGCGCTG GGACACATGG CCTTTGAGTT GCCATACGTC 
TTGGCAATAG CCGCACTGTA CGGCGCAATA AGCGACGTGG TGAAGTCCCT CACGCCATAC 
CTAGCCGCGG TCTCCATAGC CTTCATAGCC TTCTTCGCCT ACCTCACAGC GCGGGACGGA 
CTCGCCGCGC TCAAAGGCGC CATCCGCGTA GGCCAGATCT CTGTGACAAG GGGGCCAGTG 
GCCACCGGCG TCATATTCAC GGGTCTCAAC CCCTACTTCC TCCTCTGGTG GCTCACAGTG 
GGCCTCCCCC TAGTCCAAGA CGCCTACGCC CTCGGCGCAG TGGGGCTGGC AACCATGTAC 
AGCGCGCACG TGTGGATAGA CTACGCCTGG CTAGCCGTCG TGGGAGCCCT CGGCGGAGGC 
GCAGGAAAGG TGTTAGGCGC CAGGGGATAC GGCTACTTGC TCCTAGCCCT AGCCGCCATG 
CTCGCCGTAT TCGGGCTCAA CATAGCCCTC AAGACGTACC TCGGGGTGTC CCTCCTCTAG 

 

Protein sequence

MSLATVVIET LMITPSGALS PGPLTTATAV LGARAKTPAS GAAAGLGVAL GHMAFELPYV 
LAIAALYGAI SDVVKSLTPY LAAVSIAFIA FFAYLTARDG LAALKGAIRV GQISVTRGPV 
ATGVIFTGLN PYFLLWWLTV GLPLVQDAYA LGAVGLATMY SAHVWIDYAW LAVVGALGGG 
AGKVLGARGY GYLLLALAAM LAVFGLNIAL KTYLGVSLL