| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0700 |
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| Symbol | |
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| ID | 4909502 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 664401 |
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| End bp | 665174 |
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| Gene Length | 774 bp |
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| Protein Length | 257 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640124449 |
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| Product | tRNA pseudouridine synthase ACD |
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| Protein accession | YP_001055592 |
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| Protein GI | 126459314 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0101] Pseudouridylate synthase |
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| TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00000544038 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTTATC TCTACCGCGT CGCGTACGAT GGGGCGCTTT TCCACGGCTT CACTGGCCAC
TCCAACTCCG TGGAGGCGGC GCTTAGGCGC GTCTTCGGCC ATCTGCTGGG CCGGGGGAGT
AGGACGGACC CCGGAGTGTC GGCGGTGGGC AACGCCGTAT TGGCGCCTAG CCGCCTGCCG
CTGGGGTACA TAAACTCCAG GTTGCCGAGG GGGGTGTGGA CGTGGGCTGT GGCAGAGGTG
GGGGAGGGCT TTAACCCGAG GAGGGCCCGG CGTAGGAGGT ACCTCTACGT GGCGCCCCAC
TGGGGGGAGG ACGTGGAGGC CATGAGGGAG GTGGCCGAGC TGTTCAAGGG GACGCACGAC
TTCTCTTCCT TTATCCAGTT CAGGGGGGAG AGGGGGACGC CGCCTGTGAC CACGGTGGAT
GAGGTGGGGG TGGAGGTGGC GGGGCGCCTC GTCTATCTCT ACTTCGTGGG CAAGGGCTTT
AGAAATAAGC AGATTAGGAA GATGGCTTGG GCTATCTTGG CGGCGGGGCG GGGCGTGGTG
TCGAGGCGCT ACGTGGAAGA GCTTCTTGAA AGGCCGAGGC CTGGGGCTGT GCCAAGCGCG
CCGGCGGAGG GCCTCATCCT GCTCGACATT GAGTACGACG TGAAGTTCGA CGTGGACCGC
GGCGAGCTTA GGAAGGCCTA CGTCTACTTT TTGGAAAAGT ATAGGCGGTT GGAGGCCCTC
GCGGCGGCTT ATAGGGCGGC GGGGGAGCGG CTCCTCTTTT ACGACGATTT GTAA
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| Protein sequence | MPYLYRVAYD GALFHGFTGH SNSVEAALRR VFGHLLGRGS RTDPGVSAVG NAVLAPSRLP
LGYINSRLPR GVWTWAVAEV GEGFNPRRAR RRRYLYVAPH WGEDVEAMRE VAELFKGTHD
FSSFIQFRGE RGTPPVTTVD EVGVEVAGRL VYLYFVGKGF RNKQIRKMAW AILAAGRGVV
SRRYVEELLE RPRPGAVPSA PAEGLILLDI EYDVKFDVDR GELRKAYVYF LEKYRRLEAL
AAAYRAAGER LLFYDDL
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