| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0685 |
|---|
| Symbol | |
|---|
| ID | 4910046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 647144 |
|---|
| End bp | 648028 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640124434 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001055577 |
|---|
| Protein GI | 126459299 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1533] DNA repair photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0316247 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCCTCA GCGTCGTCCG GCCCTTCGAC CCCTGGCGCA ACCCGCTGTG CACATGTCCC
CCCAAGTACG GCCTCAACCC CTACACGGGG TGCGGCCACG GCTGCCTCTA CTGCTACATC
ACCTCGTACA TTCCCAACGC CTTTAACCCA AGGCCCAAGG AGAGGCTCAT GGAGCTAGTC
AGGAGAGACC TGGAGAAGAT CCCAAGGGGG GCCGTAGTCG CCCTGTCAAA CTCCTCAGAC
CCCTACACCC CGCCCGAGGC CCAGCTAGGC CTCACGAGGA AGGTCCTGGA AGCCCTCCTA
GAAAGGGGGT ACAGAGTGCT TATAACCACG AAGTCCCCCC TAGTCCTACG CGACTTAGAC
ATCCTGGCAA AGCACAGGGA GAGGGTGGCC GTGCAAATCA CTATTACAAC GCTGAGGGAG
GAGCTGGCAG AGAGGCTGGA GCCGCGCGCC CCAAGGCCCC GCGGCAGACT CGACGCCGTT
AAGAAGCTCG CCGAGGCCGG CATCAAAGTC ACCGTGAGAC TCGACCCCCT CATCCCCTAC
CTCAACGACG ACGAGGAGAA CATCGAAGAA GTCGCCTCCT CCGCGGCCGC CGCCGGCGCT
GTACACTTAG TGGCAAGCAC GTACAAGGCA AAGCGAGACA ACTTCGCGCG ACTGGCAAAC
GCCTTCCCAG ACAAGGCCCC CCTCTGGCGC GACCTGTATT TTGAGAAAGG TCAGTACTTC
CACGGCCAGT GGTATGCTCC CGCCGATTAC AGGAGGCGCG TGCTCGCCGC CGCGGCGGAG
GCGGCCAGGC GACACGGCCT ACAGTTCACA ATCTGCCGTG AGGAATTCCT CGACTTGAAC
ACGCCGGGCG CCTACTGCGA CGGCAGCCAC CTACTGCAGC GCTGA
|
|---|
| Protein sequence | MTLSVVRPFD PWRNPLCTCP PKYGLNPYTG CGHGCLYCYI TSYIPNAFNP RPKERLMELV
RRDLEKIPRG AVVALSNSSD PYTPPEAQLG LTRKVLEALL ERGYRVLITT KSPLVLRDLD
ILAKHRERVA VQITITTLRE ELAERLEPRA PRPRGRLDAV KKLAEAGIKV TVRLDPLIPY
LNDDEENIEE VASSAAAAGA VHLVASTYKA KRDNFARLAN AFPDKAPLWR DLYFEKGQYF
HGQWYAPADY RRRVLAAAAE AARRHGLQFT ICREEFLDLN TPGAYCDGSH LLQR
|
|---|
| |