Gene Pcal_0628 details

Gene Information

• Locus tag: Pcal_0628
• Symbol: rps17p
• ID: 4909411
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 590608
• End bp: 591051
• Gene Length: 444 bp
• Protein Length: 147 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 640124376
• Product: 30S ribosomal protein S17P
• Protein accession: YP_001055520
• Protein GI: 126459242
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0186] Ribosomal protein S17
• TIGRFAM ID: [TIGR03630] archaeal ribosomal protein S17P

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 41
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGACAGTCG TAAAGCTACA GTCTAGGCCA AAGGTTGGCG ACGTTGTTAC ACTTCCAGAC 
GGCAAAAAGG TGGAGGTGAA GAACATCGGC GTGCCCTACG TCTTGCCTCC GGCGGCTGTG 
TGCGACGACC CGCTCTGTCC CTGGCACGGC CACCTTAAGA TAAGGCTGAA GCTCCTCGAG 
GTGACGGTGG AGAAGGTTAG GATGCACAAG GCAGCGGTAG TCACACACGA GTGGGTGCAC 
TACCTGCCTA AGTACAACAG GTATGAGAGG CGGCGGAGGA GGATGAGGGT CAGGGTGCCC 
GAGTGCATAG AGGTTAAGCC CGGCGACAAG GTGATAATCG CCGAGACGCG CCCGCTGTCA 
AAAACCATCG CGTGGGTGGT AATAGGGAAG AAGGAAGACG TGGTTGAGTG GAAGGCGAAG 
CACGAGACTC TGCCAAGTGT CTAA 

 

Protein sequence

MTVVKLQSRP KVGDVVTLPD GKKVEVKNIG VPYVLPPAAV CDDPLCPWHG HLKIRLKLLE 
VTVEKVRMHK AAVVTHEWVH YLPKYNRYER RRRRMRVRVP ECIEVKPGDK VIIAETRPLS 
KTIAWVVIGK KEDVVEWKAK HETLPSV