| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0597 |
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| Symbol | |
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| ID | 4908277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 559988 |
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| End bp | 560494 |
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| Gene Length | 507 bp |
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| Protein Length | 168 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640124345 |
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| Product | putative RNA-binding protein |
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| Protein accession | YP_001055490 |
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| Protein GI | 126459212 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2016] Predicted RNA-binding protein (contains PUA domain) |
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| TIGRFAM ID | [TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGGTTAA GCAACAGAGA GGTGAGGGAG CTGAGGGAAA TTTACCCGCA TATGGGGCCC
GTGCTAGATG AGGCCGAGGT CGTCGAGGTA GTCCCCCTCT CTGGCGACAG CTCGCTATAT
CTCATCGACG GCGAGCCTCT ATTTTTGAAA ACGTCGGTTA AAGACGTGGG TGAAGTGGTC
GCGCCGACGC TCTTCTTTGT TCATAAATCG AGTAAGGCCA AGCTGCTTCC TCAGTACCCA
AGGGCTATTG TAGACGCGGG GGCGGTCAAG CCTATAGTAA ATGGCGCAGA TATTATGAGG
CCGGGAATAA GGGAGCTTGT AGGCGAGTTT AACAGAGGGG ATGTGGTGCT TGTATCAGAT
GAAAAGGGGC GGGTAATCGC AGTCGCAGTG GCCTTGTTTT CAAAGTCAGA AATAGTCCAA
ATGCAAAAGG GGAAGGTTTT GTTGAACATA CACCACCTTG GTGATAAGCT GTGGCAAATT
TCCCTAGAGT TGGCTAAGAA ATCCTAA
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| Protein sequence | MRLSNREVRE LREIYPHMGP VLDEAEVVEV VPLSGDSSLY LIDGEPLFLK TSVKDVGEVV
APTLFFVHKS SKAKLLPQYP RAIVDAGAVK PIVNGADIMR PGIRELVGEF NRGDVVLVSD
EKGRVIAVAV ALFSKSEIVQ MQKGKVLLNI HHLGDKLWQI SLELAKKS
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