| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0583 |
|---|
| Symbol | rfc |
|---|
| ID | 4909840 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 550049 |
|---|
| End bp | 551023 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 640124331 |
|---|
| Product | replication factor C small subunit |
|---|
| Protein accession | YP_001055476 |
|---|
| Protein GI | 126459198 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC TTTTTTGGTT TGAGAAGTAT AGGCCGCGTA GTTTTGAGGA GGTGGTGGAT
CTTGAGGAGG TTAAGGCTAG GCTTAGGGAG TTTGTCAAGG CGGGGAATTT GCCGCATCTC
CTCTTCTACG GGCCTCCTGG CACTGGGAAG ACGACGATGG CCCTGGTCTT GGCGAGAGAG
CTGTATGGGG AGTACTGGCG TGAGAACACC CTCGAGCTAA ACGCCTCAGA CGAGAGAGGA
ATCGGAGTAA TAAGAGAGCG AGTAAAAGAG TTCGCCAGAA CGGCGCCCGT GGGAAAGGCC
CCCTTCAAAC TCGTAATACT CGACGAAGCA GACAACATGA CCTCAGACGC CCAACAAGCA
CTACGCAGAA TAATGGAAAT ATACGCACAA AACACCAGAT TCATACTACT AGCAAACTAC
GTAAGTAACA TTATCGAGCC CATTCAGTCG CGCGTGGTTA TGATTAGGTT TAACCCCTTG
CCCAAGGAGG CCGTGATATC CCGGCTCAGA TTTATCGCCG AGAATGAGGG AGTAAAGGTG
AGCGACGACG CGCTAGAGGC TATTTACGAG TTTACCCAGG GCGACATGAG GAAGGCCATT
AATGCGTTGC AAGTGGCGGC CTCTGTGAGC AGAGAGGTGA CAGAGGAAGA GGTCGCGAAG
GCGCTTGGGA TGGTTAGTCC CCGGCTACTC AGGGAGGTTC TTCAAGAGGC TACGAAGGGG
AGCTTCAACA AGGCGTTGAC TCAGATATAC GGCTTTGTGG TCGATGGCGG AGTGGGAGAG
CTTGAAATAA TTAGGCAGTT ACACAGGGAG GTGTTAAGAC TCGACGTCCC GGAGTATGTA
AAGCCTGAGC TTGTGTATAT AGTGGGCAGG GCCCATTATG CTATTTTGAG GGGGGCGCGT
GGGCTTGCCC AAATTTATGG CGCGCTTGCG AAAATTAGGA AAATAGTTGT GTTTCACCAA
CCGTCTGTGA AGTAA
|
|---|
| Protein sequence | MSELFWFEKY RPRSFEEVVD LEEVKARLRE FVKAGNLPHL LFYGPPGTGK TTMALVLARE
LYGEYWRENT LELNASDERG IGVIRERVKE FARTAPVGKA PFKLVILDEA DNMTSDAQQA
LRRIMEIYAQ NTRFILLANY VSNIIEPIQS RVVMIRFNPL PKEAVISRLR FIAENEGVKV
SDDALEAIYE FTQGDMRKAI NALQVAASVS REVTEEEVAK ALGMVSPRLL REVLQEATKG
SFNKALTQIY GFVVDGGVGE LEIIRQLHRE VLRLDVPEYV KPELVYIVGR AHYAILRGAR
GLAQIYGALA KIRKIVVFHQ PSVK
|
|---|
| |