Gene Pcal_0539 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0539 
Symbol 
ID4909780 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp512005 
End bp512622 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content61% 
IMG OID640124285 
Productbeta-lactamase domain-containing protein 
Protein accessionYP_001055432 
Protein GI126459154 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGAAGTGC AGTGGGTGGA GGCGGGCCCG CTTCTCACGA ATACCTACGT GGTCTGCGAC 
TTGGATGAGT GCGTCGTGGT GGACCCCGCC GGCGGCGTGC GGGAGGTCTT GAGGCTCGTG 
GGGAAGAGGG CCGTGGTGGC TGTTGTGGCG ACGCACCTCC ACTTTGACCA CGTCTTGTCT 
GCCGCCGAGG TCGTAGAGGC TGTTAATGCG CCTTTTCACG CCCACTACGA TGACTGGCGC 
ATATACCGCG AGTTAAACAG TGTGGCTGTG GAGTGGGGGT TTGAGGTGCC TGTGTTGCCC 
GCTCCGAGAC CGCTTGGCGA ACGGCTTTGG AAGCTTGAGG TAATCCATAC GCCGGGCCAC 
ACCCCGGGCT CTGTCTCGTT GCTGGGGGAC GGCTTTGTGC TAACCGGGGA TACCCTATTC 
AAAGGCACGG TAGGCCGCAC AGACCTCCCT TTTGGGGATT GGCGGCTTTT AGTGAAGTCC 
GTGTGTAAAC TCTACCAACT GCCCGGCGGC TACAGAGTGT ACCCCGGCCA CGGCCCAGCC 
ACGTACCTGG GAGAGGAGGC GTTGTACAAC GTGGTCAACC GCTCAGTTTG TGAAAGCGGG 
GTGTACCGCA TCACATAA
 
Protein sequence
MEVQWVEAGP LLTNTYVVCD LDECVVVDPA GGVREVLRLV GKRAVVAVVA THLHFDHVLS 
AAEVVEAVNA PFHAHYDDWR IYRELNSVAV EWGFEVPVLP APRPLGERLW KLEVIHTPGH 
TPGSVSLLGD GFVLTGDTLF KGTVGRTDLP FGDWRLLVKS VCKLYQLPGG YRVYPGHGPA 
TYLGEEALYN VVNRSVCESG VYRIT