| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0484 |
|---|
| Symbol | |
|---|
| ID | 4909651 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 463536 |
|---|
| End bp | 464441 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 28% |
|---|
| IMG OID | 640124234 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_001055381 |
|---|
| Protein GI | 126459103 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1215] Glycosyltransferases, probably involved in cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.68216 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAATA AAGAAGGGGT TACAATTGGA ATACCGGTTT ACAACGAAGA AAAAAATATA
CAAAGACTTC TTAAAAGTTT GGCCATTCAA AAAAATGTTA ATATAGATCA AACAATCATC
GTTAATGATG GTTCTACAGA TAATACAACA GCAAAAATAC ATGAACTTAA TACCTCAATA
AAAAACAAAC TTAATTTACA TATAATTAAC TTAGAAAAAA ACATGGGAAA AGCAAATGCG
CTAAACATAA TTTTTAACAA AGCAAATTCG GAAATATTGA TTATCCTAGA TGCAGATGTA
ATTCTTATAA AAAGCAATAC ATTAGAAGAA TTGTTACGAT GCTTTCAAAT GGACAAAAAC
ATAGGATTAG TAAGCGGATG GTACATAATG GAGCCGCTTA AATCAACAAA TATAATTGCA
AGAGCGTATA GATTTTCAAA CATATTACTC GAAAATCTAA GCAAAAAGAA ACCATTGTAT
AGTGCCACTG GTGCTATTAT GGCTTTACAT AAAAGCATTT ATAAAAAACT ATCACTGCCA
CACAATGTTG TGAGGGATGA TGCATATATT TATCTCTATA CAGTAAAAAA TGGAAAAAAG
TATGTGTTTT GTCCAAACGC AAGAGTAATT ATACCTATAT ATGAAAAAAT GACAACTAAA
ACATTTTTAT ATAGACAACT TCGTGCTACT CGAATTCCAA AAGTTTTTGT AAAAGAATTT
GGACAAATTG CAATTGATGA ACTTAAAATA AATCCTTCAA TAGCAATTAA ATCGTTTATA
AAATCTTATA TTAAACAACC ATTTGATGGT ACAATATACC TCATACTAAA AGTTGTATCA
AGTATTTATA AAAGACTTTC AACAAACACA AGCGTTAGAA TTCATTGGAA AAATTATGAA
AAATAA
|
|---|
| Protein sequence | MQNKEGVTIG IPVYNEEKNI QRLLKSLAIQ KNVNIDQTII VNDGSTDNTT AKIHELNTSI
KNKLNLHIIN LEKNMGKANA LNIIFNKANS EILIILDADV ILIKSNTLEE LLRCFQMDKN
IGLVSGWYIM EPLKSTNIIA RAYRFSNILL ENLSKKKPLY SATGAIMALH KSIYKKLSLP
HNVVRDDAYI YLYTVKNGKK YVFCPNARVI IPIYEKMTTK TFLYRQLRAT RIPKVFVKEF
GQIAIDELKI NPSIAIKSFI KSYIKQPFDG TIYLILKVVS SIYKRLSTNT SVRIHWKNYE
K
|
|---|
| |