| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0172 |
|---|
| Symbol | |
|---|
| ID | 4909551 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 167603 |
|---|
| End bp | 168544 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640123922 |
|---|
| Product | thioesterase superfamily protein |
|---|
| Protein accession | YP_001055075 |
|---|
| Protein GI | 126458797 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1607] Acyl-CoA hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGACGTGT TGGACACTTT GACGGAGTAC GTGGCGTGGG TTTCGCAGCG GCACGTCAAC
CCTCTGGGGA ATCTATACGG TGGATATATG CTCCACTGGC TGGTGGACGC CGGGTCTATT
ACTGCCATGA AGTTCGCCGA GGGCAACGTT GTGTTGGGGT TTTTGGATAA GACGCATTTT
GTCTCCCCGG TGAGGCTGGG CGACTTGGTG ACTTACAGGG GGTGGGTGGT CAATGTGCGG
AGGAGTAGCA TGGGGGTCCT TGTGGAGGCG TACGTCTCTA GGGGCGGCGA GGCGCGTTTA
GCCACAGTTG GCAGGATGGT CTTTGTGAAA GTGGATGGGG AGGGGAGGCC CGTCCCCGTC
GGCAAGTCGC TTACATGTGC GGGCGAGGTT AAGCGGCTGT GTGAATACTT CCAGGAGTGG
CGGGCGAGGG TGGACGAGGC GCTGAGGAGG GAGGAGAGGG CTGACCCCGG GTGGGAGGCG
TTGAGCCACT TTATCGCAAT GCCTGAGGAC TCTCTAGACG GAGTGTTGAT GTACGGGGGG
AGGCTTCTCT TTAGGCTGGA CGAAGTGACG TCTATCGCCG CTTTAAGGTT CTACCCCTCC
ATATATGTGA CGGCCAGCGT CAACAGCATG GCTTTTAGAA GGCCCATCTA CGTGGGTGAC
ATTGTCTCAA TAAGGGCCGG CGTCACGTAC GTTGGAAGGA CTAGCGTTGA AGTGGGGTTC
GCAGTGGAGG CCCTCGGGGT GAGGGGCAGG AGGCTTGTGG CAGATGGCTA TTTTACATTT
GTAAACATGT CTGGGGGCAG GCCGAGCGAG TTGCCGGCGG GGCCGCAGGG CGATGAGGAG
GCGAGGAGGC GTAAGGAGGA GAGCGTAAGA GAGGCGCAGA TGTTGAAGAC GCTGAAGCCG
CCGCCGGCGC GCAACCTCCC CTGGATGACT CAGCTACTGT AG
|
|---|
| Protein sequence | MDVLDTLTEY VAWVSQRHVN PLGNLYGGYM LHWLVDAGSI TAMKFAEGNV VLGFLDKTHF
VSPVRLGDLV TYRGWVVNVR RSSMGVLVEA YVSRGGEARL ATVGRMVFVK VDGEGRPVPV
GKSLTCAGEV KRLCEYFQEW RARVDEALRR EERADPGWEA LSHFIAMPED SLDGVLMYGG
RLLFRLDEVT SIAALRFYPS IYVTASVNSM AFRRPIYVGD IVSIRAGVTY VGRTSVEVGF
AVEALGVRGR RLVADGYFTF VNMSGGRPSE LPAGPQGDEE ARRRKEESVR EAQMLKTLKP
PPARNLPWMT QLL
|
|---|
| |